Fig. 2
From: STR-realigner: a realignment method for short tandem repeat regions
A flowchart of algorithms considered in STR-realigner. After initialization of penalty and traceback information for first query position with Algorithm 1, penalty and traceback information are updated for other query positions with Algorihtm 2 in a dynamic programming manner. Then, a realignment with the best penalty is obtained from traceback information with Algorithm 9