Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing

Table 1 SNP count per chromosome

Chromosome	# SNPs	# SNPs within annotated exons	% SNPs within annotated exons	# of affected genes
1	12044	3807	31.6	816
2	11426	4466	39.1	949
3	13948	4942	35.4	1026
4	8419	2607	31.0	555
5	7886	2554	32.4	482
6	10854	3254	30.0	700
7	7754	2525	32.6	534
8	6890	2218	32.2	492
9	6428	1890	29.4	409
10	7574	2331	30.8	520
11	7058	2003	28.4	445
12	8310	2582	31.1	549
TOT	108591	35179	32.4	7477

For each chromosome it is reported the total number of polymorphisms, the number of SNPs within annotated exons and the number of affected genes

ISSN: 1471-2164