Table 4 Frequency of base-pairing sequences at coordinates 29–31 and 39–41 in the coding stem of reannotated tRNA genes of tRNAdb-CE v.8. All sequences that appear more than 100 times in total are shown; complete data are shown for initiator tRNA genes
From: Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria
Met | Ini | kIle | Sum | ||
|---|---|---|---|---|---|
29-31,39-41 | GGG,CCC | 2 | 3849 | 1 | 3852 |
AGG,CCU | 1 | 522 | 1 | 524 | |
AGG,UCU | 6 | 34 | 0 | 40 | |
GGG,UCC | 0 | 18 | 0 | 18 | |
CGG,CCG | 869 | 0 | 974 | 1843 | |
UCA,UGA | 405 | 0 | 0 | 405 | |
GCA,UGC | 369 | 0 | 0 | 369 | |
GGA,UCC | 335 | 0 | 583 | 918 | |
CGA,UCG | 213 | 0 | 654 | 867 | |
GGA,CCC | 114 | 0 | 75 | 189 | |
Sum | 2314 | 4438 | 2286 | 9038 | |