Database (target + decoy) | TD | BP | MB | SepTD | SepBP | SepMB |
---|
6FTTy + 6FTDy
| Total | 3,626 | 4,281 | 3,807 | 3,942 | 4,515 | 3,870 |
Known | 3,603 | 4,106 | 3,781 | 3,942 | 4,443 | 3,870 |
Novel | 23 | 175 | 26 | 0 | 72 | 0 |
6FTTh + 6FTDh
| Total | 4,177 | 5,620 | 4,813 | 6,347 | 6,018 | 6,188 |
Known | 4,115 | 5,316 | 4,765 | 6,336 | 5,950 | 6,180 |
Novel | 62 | 304 | 48 | 11 | 68 | 8 |
SGTh + SGDh
| Total | 8,034 | 11,059 | 9,152 | 8,957 | 11,150 | 9,552 |
Known | 7,966 | 11,016 | 9,087 | 8,940 | 11,136 | 9,531 |
Novel | 68 | 43 | 65 | 17 | 14 | 21 |
- 6FTTy (or 6FTTh): proteogenomic database constructed by 6-frame translation of yeast (or human) genome. 6FTDy (or 6FTDh): decoy database for 6FTTy (or 6FTTh). SGTh: proteogenomic database constructed by splicing information obtained from human RNA sequencing data. SGDh: decoy database for SGTh. TD: target-decoy strategy. BP: target-decoy strategy using a refined score calculated by the self-boosted Percolator. MB: mixture model-based method. SepTD, SepBP, and SepMB denote separate filtering of known and novel peptides using TD, BP, and MB, respectively