Table 3 Genotype-by-sequence (GBS) markers linked with quantitative loci (QTL) that confer resistance to stem rust pathogen races TTTTF and TTKSK
Method | Race | Chromosome | GBS Marker | LOD | 5% LOD (permutation threshold) | Phenotypic variance (%) | Bayes 95% interval (cM) |
|---|---|---|---|---|---|---|---|
CIM | TTTTF | 2U@94.2 | Aeup1GBS11453 | 40.3 | 5.27 | 79.59 | 92.2–94.2 |
TTKSK | 2U@94.2 | Aeup1GBS11453 | 9.49 | 6.34 | 59.03 | 94.2–95.0 | |
MQM | TTTTF | 2U@95.0 | Aeup1GBS13266 | 18.03 | 2.40 | 78.7 | 90.0–96.24 |
TTKSK | 2U@95.0 | Aeup1GBS13266 | 5.65 | 2.47 | 52.43 | 85–105 | |
TTKSK | 7U@0.0 | Aeup1GBS16369 | 3.46 | 2.47 | 18.85 | 0.0–21.02 |