Fig. 3

Genome sequence and gene content variability in PH-1 compared to other isolates. SNPs/indels and absent genes between genomes were determined separately, by whole genome alignments and BLASTn using PH-1 as a reference. The number of SNPs and indels per 100 kb were averaged for each species and are presented separately for F. graminearum (black lines), F. asiaticum (red lines), and F. meridionale (blue lines). Positions of absent genes whose sequences had a lowest expected value > 1E-10 by BLASTn for at least one member of the species are presented as sySNPsols; F. graminearum (black diamonds), F. asiaticum (red diamonds), and F. meridionale (blue diamonds). Chromosomes are demarked by vertical dashed lines