From: Transcriptome analysis in switchgrass discloses ecotype difference in photosynthetic efficiency
No | Rice homolog | Protein function description | Average FPKM_ Lowland | Average FPKM_ VS16 | Average Fold change |
---|---|---|---|---|---|
1 | Peroxiredoxin | Antioxidant defense system | 280 | 98 | 2.9 |
2 | Peptidyl-prolyl cis-trans isomerase | Catalysis of the geometric or structural changes within one molecule | 540 | 211 | 2.6 |
3 | NAD dependent epimerase/dehydratase family protein | Catalytic activity and coenzyme binding | 308 | 121 | 2.5 |
4 | Glutathione S-transferase | Detoxication and toxification mechanisms | 351 | 122 | 2.9 |
5 | Ftsh protease | Eliminating abnormal membrane proteins in chloroplast | 1005 | 401 | 2.5 |
6 | AAA-type atpase family protein | F-type ATPase | 308 | 68 | 4.8 |
7 | ATP synthase B chain, chloroplast precursor | F-type ATPase | 780 | 314 | 2.5 |
8 | ATP synthase F1, delta subunit family protein | F-type ATPase | 489 | 168 | 2.9 |
9 | ATP-dependent Clp protease ATP-binding subunit clpa homolog, chloroplast precursor | F-type ATPase | 690 | 336 | 2.1 |
10 | Glyceraldehyde-3-phosphate dehydrogenase | Glycolysis | 893 | 356 | 2.6 |
11 | Cysteine proteinase 1 precursor | Hydrolysis of peptide bonds in a polypeptide chain | 409 | 107 | 4.2 |
12 | B-box zinc finger family protein | Intracellular protein transport | 310 | 118 | 2.6 |
13 | Chlorophyll A-B binding protein | LHC-Antana protein | 2111 | 794 | 5.9 |
14 | Zinc finger A20 and AN1 domain-containing stress-associated protein | Metal ion and DNA binding | 347 | 139 | 2.5 |
15 | Metallothionein | Metal ion binding | 4704 | 1446 | 5.2 |
16 | Metallothionein-like protein 3B | Metal ion binding | 1471 | 94 | 14.3 |
17 | NDH-MÂ H Plastoquinine dehydrogenase | Photosynthetic electron transport | 276 | 92 | 3.0 |
18 | 2Fe-2S iron-sulfur cluster binding domain containing protein | Photosynthetic electron transport | 462 | 136 | 3.4 |
19 | Calvin cycle protein CP12 | Photosynthetic electron transport | 1664 | 402 | 4.1 |
20 | Carbonic anhydrase, chloroplast precursor | Photosynthetic electron transport | 1229 | 300 | 4.5 |
21 | Ferredoxin--NADP reductase, chloroplast precursor | Photosynthetic electron transport | 523 | 210 | 2.6 |
22 | Fructose-1,6-bisphosphatase | Photosynthetic electron transport | 282 | 106 | 2.7 |
23 | Fructose-bisphospate aldolase isozyme | Photosynthetic electron transport | 1724 | 714 | 2.6 |
24 | Phosphoglycerate kinase protein | Photosynthetic electron transport | 312 | 106 | 3.1 |
25 | Phosphoribulokinase/Uridine kinase family protein | Photosynthetic electron transport | 285 | 72 | 4.2 |
26 | Pyruvate, phosphate dikinase, chloroplast precursor | Photosynthetic electron transport | 885 | 376 | 2.4 |
27 | Ribulose bisphosphate carboxylase small chain, chloroplast precursor | Photosynthetic electron transport | 2367 | 1113 | 2.2 |
28 | Ribulose-phosphate 3-epimerase, chloroplast precursor | Photosynthetic electron transport | 321 | 98 | 3.3 |
29 | Thioredoxin | Photosynthetic electron transport | 725 | 237 | 3.9 |
30 | Transketolase, chloroplast precursor | Photosynthetic electron transport | 399 | 135 | 3.2 |
31 | Proton gradient regulation 5 (pgr5) | Photosynthetic electron transport in photosystem I | 294 | 128 | 2.3 |
32 | Photosystem I reaction center subunit, chloroplast precursor | Photosystem I subunits | 892 | 416 | 2.2 |
33 | Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor | Photosystem II main subunits | 624 | 153 | 4.1 |
34 | Cytochrome b6f complex subunit | Photosystem II main subunits | 284 | 96 | 2.9 |
35 | Oxygen evolving enhancer protein 3 domain containing protein | Photosystem II subunits | 233 | 84 | 3.0 |
36 | Photosystem II reaction center W protein, chloroplast precursor | Photosystem II subunits | 555 | 176 | 3.6 |
37 | Dehydrin | Plant response and adaptation to abiotic stresses | 299 | 111 | 2.7 |
38 | Fatty acid desaturase | Plant responses to abiotic stresses | 263 | 102 | 2.6 |
39 | Enzyme of the cupin superfamily protein | Protect plants from the effects of oxidative stress | 447 | 205 | 2.2 |
40 | Tetratrico peptide repeat region TPR domain protein | Protein binding | 239 | 77 | 3.1 |
41 | 60S acidic ribosomal protein | Protein synthesis | 281 | 114 | 2.5 |
42 | Elongation factor | Protein synthesis in the process of cell cycle and elongation | 274 | 82 | 3.6 |
43 | Hypoxia-responsive family protein | regulation of growth and and developmnt | 711 | 148 | 4.8 |
44 | Glycine-rich protein A3 | RNA-binding | 351 | 158 | 2.2 |
45 | RNA recognition motif containing protein | RNA-binding domain | 905 | 311 | 3.0 |
46 | BBTI8 - Bowman-Birk type bran trypsin inhibitor precursor | Serine-type endopeptidase inhibitor activity | 316 | 95 | 3.6 |
47 | Egg apparatus-1 | Small secretory proteins and pollen tube guidance | 227 | 63 | 4.4 |
48 | Elongation factor thermo unstable (EF-Tu) | Synthesizes new proteins by translation at the ribosome | 484 | 232 | 2.1 |
49 | Oryzain gamma chain precursor | cysteine-type peptidase activity | 546 | 148 | 3.6 |
50 | Ubiquitin family protein | Targeted protein degradation | 477 | 200 | 2.4 |
51 | Ubiquitin-conjugating enzyme | Targets a protein for degradation via the proteasome | 386 | 110 | 4.0 |
52 | CCT/B-box zinc finger protein | Transcription factor | 291 | 114 | 2.6 |
53 | Ribosomal protein L35 | Translation, ribosomal component | 273 | 116 | 2.4 |
54 | Aquaporin protein | Transport of water and small solutes | 1022 | 239 | 4.8 |
55 | Membrane protein | Water and nutrient transport across membranes | 799 | 255 | 3.1 |