BMC Genomics

Table 1 Numbers and frequencies of pre-filtration and filtered SNP loci in tomato S. lycopersicum and S. pimpinellifolium genomes

From: Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of solanum pimpinellifolium using genotyping by sequencing

		Number of SNPs		Frequency (kb) of SNPs
Chromosome	Size of LG (Mb)	Pre-filtration^a	Filtered^b	Pre-filtration^a	Filtered^b
T1	98.4	2193	293	44.9	335.9
T2	55.2	1773	297	31.2	186.0
T3	70.8	1979	200	35.8	353.8
T4	66.4	1816	271	36.6	245.1
T5	65.9	2002	442	32.9	149.0
T6	49.5	3521	382	14.1	129.7
T7	68.0	1551	213	43.9	319.4
T8	65.8	1360	176	48.4	373.9
T9	72.4	2664	299	27.2	242.2
T10	65.5	1503	299	43.6	219.1
T11	56.2	2430	165	23.1	340.8
T12	67.1	885	88	75.8	762.1
Total	801.3	23677	3125	33.8	256.4

^aNumber and frequency of SNPs physically mapped in tomato genome
^bNumber and frequency of SNPs retained after the filtration process

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