Tree method | Tree name | Fraction of correct parent/child relations | Fraction of correct clades in tree structure |
---|---|---|---|
CSI phylogeny, pruning disabled | CSI_all_1 | 0.73 | 0.71 |
CSI phylogeny, pruning set to 10Â bp | CSI_all_2 | 0.52 | 0.61 |
CSI phylogeny, pruning disabled NC_000913 as ref | CSI_all_3 | 0.52 | 0.61 |
NDtree, z-score 1.96 | ND_all_1 | 0.65 | 0.63 |
NDtree, z-score 1.96, UPGMA tree method | ND_all_2 | 0.20 | 0.08 |
NDtree pairwise comparison, z-score 1.96 | ND_all_3 | 0.26 | 0.29 |
NDtree, z-score 1.64 | ND_all_4 | 0.65 | 0.63 |
NDtree, NC_000913 as ref, z-score 1.96 | ND_all_5 | 0.65 | 0.63 |
NDtree, NC_012759 as ref, z-score 1.96 | ND_all_6 | 0.65 | 0.63 |
NDtree, NC_017641 as ref, z-score 1.96 | ND_all_7 | 0.65 | 0.63 |
REALPHY, ref NC_012759 and NC_000913, PhyML | RP_all_1 | 0.55 | 0.51 |
REALPHY, ref NC_012759 and NC_000913, RAxML | RP_all_2 | 0.33 | 0.24 |