Table 6 Summary of classification of migrant and hybrid specimens according different methods: the original classification using microsatellites, the classification using SNP-specific markers from the B. bonaerensis (BON) vs. B. a. acutorostrata (ACU) specific assays WP1 and WP2, the classification using SNP without 5% MAF, the direct assignment using STRUCTURE and ONCOR against a simulated SNP-based baseline. Column “ID” gives the internal NMDR identification numbers
ID | Classif microsatellites | Classif SNP | Classif SNP w/ 5% MAF | STRUCTURE classif against simulated SNP-based baseline | GeneClass direct assignment against simulated SNP-based baseline (and score, %) | ONCOR direct assignment against simulated SNP-based baseline (and probability) |
|---|---|---|---|---|---|---|
9601017 [4] | BON | BON | BON | BON | BON (93.86) | BON (1.000) |
701550 [4] | F1 | F1 | F1 | F1 | F1 (100) | F1 (1.000) |
901016a | ACU (outlier) | ACU | ACU | ACU | ACU (93.74) | ACU (1.000) |
1001065 [7] | F1 | F1 | F1 | F1 | F1 (100) | F1 (1.000) |
1001065_fetus [7] | F2 (F1 + ACU) | F2A | F2A | F2A | F2A (99.92) | F2A (0.999) |
1101069a | ACU (outlier) | ACU | ACU | ACU | ACU (93.90) | ACU (1.000) |
1101158a | ACU (outlier) | F2A, most likely | F3A/F2A | F2A | F2A (76.89) | F2A (1.000) |
1101205a | ACU (outlier) | ACU | ACU | ACU | ACU (93.90) | ACU (1.000) |
1401130a | ACU (outlier) | ACU | ACU | ACU | ACU (93.74) | ACU (1.000) |