Transcriptome profiling reveals the genetic basis of alkalinity tolerance in wheat

BMC Genomics

Table 1 Statistics analysis of the six DGE tag libraries constructed from the seedling roots of JN177 and SR4 mapping to NCBI unigene databases

Mapping to NCBI unigene databases	JNCK	JN0.5	JN24	SRCK	SR0.5	SR24
Raw data	6234376	5975104	5763389	5954683	5897848	5845744
Total number of clean tags	5943058	5712643	5487894	5692072	5633349	5525666
Clean tags mapped to gene	3184388	2806047	2666921	2837152	2745121	2771868
% of clean tags mapped to gene	53.58%	49.12%	48.60%	49.84%	48.73%	50.16%
Unambiguous tags mapped to gene	2741617	2430920	2317889	2460457	2379007	2388369
% of unambiguous tags mapped to gene	46.13%	42.55%	42.24%	43.23%	42.23%	43.22%
Unambiguous tag-mapped genes	21552	20185	20483	20663	20199	20648

Note: JN JN177, SR SR4, CK plants not subjected to alkalinity stress, 0.5 and 24: plants subjected to alkalinity stress for 0.5 h and 24 h, respectively

ISSN: 1471-2164