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Table 1 Descriptive statistics of the sequencing runs N0015 and N0030

From: Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller

 

N0015

N0030

Target region in base pairs

395,303

681,980

% in coding region

8

100

Mean read pairs per base

42,562

34,169

Mean barcode per base

4,825

3,612

Mean read pairs per barcode

8.5

8.6

% Bases >0.2× mean read depth

96.3

99.3

% NA12878

10

2

Unique heterozygous NA12878 SNP

6,175

223

Unique heterozygous NA12878 INDEL

701

49