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Table 2 QTLs detected for vine, flowering, plant and fruit traits

From: An SNP-based saturated genetic map and QTL analysis of fruit-related traits in Zucchini using Genotyping-by-sequencing

QTL Trait LG Genetic position (cM) LOD interval Flanking markers Additive_effect Model.pvalues R2 E.pvalue* GxE.pvalue**
Li_10 Leaf incision 10 33.9 61.8–66.9 CP32_scaffold000009_2374010-CP32_scaffold000009_2556718 0.57 4.48E-10 50.05   
Sl_12 Silver leaf 12 59.3 35.1–39.8 CP32_scaffold000031_1726079-CP32_scaffold000031_2012785 0.19 3.87E-12 23.32   
Sl_1 Silver leaf 1 132.5 1.9–10.1 CP32_scaffold000084_728121-CP32_scaffold000059_548298 0.06 5.09E-03 3.83 5.77E-03 4.59E-02
Sl_16 Silver leaf 16 66.1 5.7–10.8 CP32_scaffold000034_1033951-CP32_scaffold000028_1777958 0.11 1.22E-04 8.01 1.67E-02 4.04E-02
DFeF_12 Days to female flowering 12 33.1 2.6–4.8 CP32_scaffold000074_621895-CP32_scaffold000096_181501 2.71 8.75E-08 7.87 3.00E-09  
DFeF_9 Days to female flowering 9 116.0 5.2–8.4 CP32_scaffold000013_960688-CP32_scaffold000013_1308585 1.21 1.22E-02 2.61 4.07E-09 3.14E-02
IFSh_3 Immature Fruit shape 3 173.2 17.7–26.5 CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 0.40 1.57E-14 17.83   
IFSh_12 Immature fruit shape 12 25.0 21.8–25.4 CP32_scaffold000065_760668-CP32_scaffold000074_729362 0.25 4.77E-06 6.73   
IFLe_3 Immature Fruit length 3 173.2 30.7–40.2 CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 2.11 2.27E-15 31.79 1.67E-02  
IFLe_15 Immatute fruit length 15 34.7 7.5–10.1 CP32_scaffold000056_543412-CP32_scaffold000056_920404 0.96 4.79E-06 6.72 4.18E-02 4.40E-02
IFLe_12 Immature fruit length 12 24.2 8.9–11.7 CP32_scaffold000065_589737-CP32_scaffold000074_729362 1.04 1.07E-06 7.61   
IFWi_3 Immature Fruit width 3 171.0 10.5–13.9 CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 0.68 3.22E-15 18.68 1.93E-02  
MFSh_3 Mature Fruit shape 3 171.0 5.5–8.4 CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 0.26 1.72E-09 10.99   
MFSh_4 Mature fruit shape 4 39.4 5.3–9.3 CP32_scaffold000159_92504-CP32_scaffold000022_375710 0.10 3.43E-02 3.43   
MFSh_5 Mature fruit shape 5 27.9 9.4–11.3 CP32_scaffold000018_362002-CP32_scaffold000018_549964 0.14 1.98E-03 3.02   9.85E-03
MFLe_3 Mature Fruit length 3 169.1 46.7–67.4 CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 4.51 2.37E-15 38.71 1.98E-02  
MFLe_12 Mature fruit length 12 19.3 17.8–20.2 CP32_scaffold000065_389234-CP32_scaffold000065_538115 1.88 3.72E-06 6.64   
MFLe_6 Mature fruit length 6 19.7 25.6–28.7 CP32_scaffold000003_3022364-CP32_scaffold000003_3087204 1.35 7.97E-04 3.55   
MFLe_9 Mature fruit length 9 119.3 13.8–23.0 CP32_scaffold000013_890110-CP32_scaffold000013_959962 1.86 7.84E-06 6.21   
MFWi_3 Mature Fruit width 3 171.0 7.04–13.4 CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 0.77 8.63E-13 15.14 3.71E-04  
MFWi_12 Mature fruit width 12 24.9 16.7–19.1 CP32_scaffold000065_760668-CP32_scaffold000074_780275 0.55 9.55E-07 7.42 4.31E-04 1.89E-02
IFRib_3 Immature fruit ribbing 3 69.4 4.1–10.7 CP32_scaffold000006_3196015-CP32_scaffold000006_3616125 0.35 1.73E-07 8.69 2.31E-04 2.16E-02
MFRib_12 Mature fruit ribbing 12 110.2 14.1–20.5 CP32_scaffold000031_115435-CP32_scaffold000045_1342921 0.23 3.11E-09 10.66 8.62E-03  
MFRib_21 Matre fruit ribbing 21 19.2 10.8–19.6 CP32_scaffold000007_4220403-CP32_scaffold000110_136233 0.19 6.73E-06 6.19   
IPeLe_10 Immature peduncle length 10 71.3 10.7–13.1 CP32_scaffold000009_272548-CP32_scaffold000009_704495 0.64 1.32E-06 7.61   
IPeLe_16 Immature peduncle length 16 14.9 12.9–15.9 CP32_scaffold000030_1135277-CP32_scaffold000030_1337312 0.46 8.94E-04 3.67   
MPeLe_14 Mature peduncle length 14 29.3 16.7–19.2 CP32_scaffold000039_1662180-CP32_scaffold000011_1038061 0.42 4.67E-04 3.98   
ILRCo_4 Immature rind color, L parameter 4 14.9 46.5–58.8 CP32_scaffold000066_82542-CP32_scaffold000143_78868 9.86 0.00E + 00 40.64 2.78E-02  
ILRCo_10 Immature rind color, L parameter 10 99.5 9.02–12.6 CP32_scaffold000029_1388824-CP32_scaffold000029_1802506 3.73 1.65E-05 6.03   
ILRCo_1 Immature rind color, L parameter 1 75.2 12.8–15.9 CP32_scaffold000046_683368-CP32_scaffold000046_1012066 3.00 8.31E-04 3.67   
IbRCo_4 Immature rind color, b parameter 4 15.3 20.1–22.9 CP32_scaffold000066_82542-CP32_scaffold000143_130468 2.19 1.59E-12 15.40   
IbRCo_3 Immature rind color, b parameter 3 62.9 11.5–16.7 CP32_scaffold000006_2344126-CP32_scaffold000006_2759336 1.38 1.77E-05 4.99   
IbRCo_12 Immature rind color, b parameter 12 27.5 9.3–11.9 CP32_scaffold000074_497940-CP32_scaffold000074_795378 0.91 5.23E-03 2.58   
IaRCo_10 Immature rind color, a parameter 10 104.9 5.9–11.8 CP32_scaffold000029_1132025-CP32_scaffold000029_1388824 1.05 3.64E-08 9.66   
IaRCo_3 Immature rind color, a parameter 3 86.1 20.3–27.8 CP32_scaffold000187_88187-CP32_scaffold000187_88366 1.17 5.86E-10 12.06 3.09E-02 7.17E-03
MLRCo_4 Mature rind color, L parameter 4 14.9 65.1–75.9 CP32_scaffold000066_82542-CP32_scaffold000143_78868 12.70 0.00E + 00 40.30 3.20E-02  
MLRCo_1 Mature rind color, L parameter 1 67.3 7.1–17.2 CP32_scaffold000010_400289-CP32_scaffold000175_201011 2.47 2.54E-02 1.60 1.50E-02  
MLRCo_2 Mature rind color, L parameter 2 13.2 13.4–16.2 CP32_scaffold000001_4952915-CP32_scaffold000001_5092215 3.55 1.31E-03 3.27 1.25E-02 4.84E-02
MbRCo_4 Mature rind color, b parameter 4 19.6 33.3–39.7 CP32_scaffold000180_195391-CP32_scaffold000143_294806 3.17 6.52E-11 12.84 1.18E-02  
MbRCo_19 Mature rind color, b parameter 19 52.1 6.9–12.4 CP32_scaffold000005_1580923-CP32_scaffold000005_2422557 2.63 1.49E-07 8.51 1.34E-02  
MaRCo_4 Mature rind color, a parameter 4 50.44 20.02–25.7 CP32_scaffold000022_598182-CP32_scaffold000022_1004798 2.08 1.33E-15 18.59   
IbFCo_10 Immature flesh color, b parameter 10 102.9 45.1–58.2 CP32_scaffold000029_1132025-CP32_scaffold000029_1802506 1.31 3.45E-12 15.02   
IaFCo_10 Immature flesh color, a parameter 10 100.4 12.1–15.4 CP32_scaffold000029_1280511-CP32_scaffold000029_1747554 1.05 0.00E + 00 28.31 2.24E-02 9.62E-04
IaFCo_13 Immature flesh color, a parameter 13 30.4 7.3–9.3 CP32_scaffold000113_399328-CP32_scaffold000049_351119 0.46 4.51E-05 5.42 4.02E-02  
MbFCo_19 Mature flesh color, b parameter 19 52.1 55.8–68.8 CP32_scaffold000005_1580923-CP32_scaffold000005_2422557 3.86 0.00E + 00 62.93   
MaFCo_19 Mature flesh color, a parameter 19 38.8 11.5–15.8 CP32_scaffold000005_2532610-CP32_scaffold000005_2907973 1.12 7.77E-16 18.86 5.64E-05 5.45E-03
MaFCo_10 Mature flesh color, a parameter 10 37.89 8.8–11.7 CP32_scaffold000009_1923620-CP32_scaffold000009_2317405 0.31 3.09E-02 1.49 3.63E-04  
MaFCo_13 Mature flesh color, a parameter 13 53.1 5.4–9.4 CP32_scaffold000017_2743863-CP32_scaffold000108_169208 0.41 5.71E-03 2.43 3.42E-04  
  1. QTLs detected using data from the RIL population genotyped by GBS and phenotyped in three environments