Table 1 Number of clean reads generated from each sample were sequenced and mapped to the 97103 genome using TopHat
Sample name | Total no. of clean reads | Reads mapped | Percentage of mapped reads (%) |
|---|---|---|---|
C10_R1 | 45,512,554 | 41,874,167 | 92.0% |
C10_R2 | 44,710,296 | 40,648,859 | 90.9% |
C18_R1 | 40,934,174 | 34536,742 | 84.4% |
C18_R2 | 37,227,820 | 33,324,089 | 89.5% |
C26_R1 | 34,522,116 | 31,548,790 | 91.4% |
C26_R2 | 56,624,960 | 50,605,220 | 89.4% |
C34_R1 | 41,100,524 | 37,558,563 | 91.4% |
C34_R2 | 41,191,050 | 37,844,289 | 91.9% |
C42_R1 | 42,167,238 | 38,172,566 | 90.5% |
C42_R2 | 41,281,894 | 37,498,029 | 90.8% |
L10_R1 | 41,457,238 | 37,607,060 | 90.7% |
L10_R2 | 39,140,418 | 35,380,533 | 90.4% |
L18_R1 | 39,760,896 | 35,735,866 | 89.9% |
L18_R2 | 36,210,552 | 32,394282 | 89.5% |
L26_R1 | 64,791,768 | 59,029,106 | 91.1% |
L26_R2 | 41,861,552 | 37,817,640 | 90.3% |
L34_R1 | 37,945,012 | 26,104,240 | 68.8% |
L34_R2 | 44,288,670 | 39,169,275 | 88.4% |
L42_R1 | 46,102,036 | 38,075,275 | 82.6% |
L42_R2 | 41,935,016 | 38,165,978 | 91.0% |