An improved genome assembly uncovers prolific tandem repeats in Atlantic cod

BMC Genomics

Table 2 Comparison between the gene annotations of gadMor1 and gadMor2

Assembly	Total size	Number of genes	N50 length (bp)^b	Amount gap bases	BUSCO^d
	transcriptome (Mbp)^a			(Mbp)^c
gadMor1	32.2 (24.8)	22 618 ^e	1 854 (1 398)	1.7	2 947 (79.7%)
gadMor2	52.9 (33.4)	23 246 ^f	3 239 (1 995)	0	2 714 (73.4%)

^aSum of bases in transcripts with UTRs (without UTRs)
^bHalf the transcriptome is in sequences of this length or longer, with UTRs (without UTRs)
^cGaps represented as ’N’s in annotated transcripts
^dNumber (percentage) of conserved actinopterygii genes detected out of a total of 3,698
^eWhen excluding pseudogenes, alternative transcripts, etc., the number of protein-coding genes is 20,095
^fProtein-coding genes only

ISSN: 1471-2164