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Table 2 Comparison between the gene annotations of gadMor1 and gadMor2

From: An improved genome assembly uncovers prolific tandem repeats in Atlantic cod

Assembly Total size Number of genes N50 length (bp)b Amount gap bases BUSCOd
  transcriptome (Mbp)a    (Mbp)c  
gadMor1 32.2 (24.8) 22 618 e 1 854 (1 398) 1.7 2 947 (79.7%)
gadMor2 52.9 (33.4) 23 246 f 3 239 (1 995) 0 2 714 (73.4%)
  1. aSum of bases in transcripts with UTRs (without UTRs)
  2. bHalf the transcriptome is in sequences of this length or longer, with UTRs (without UTRs)
  3. cGaps represented as ’N’s in annotated transcripts
  4. dNumber (percentage) of conserved actinopterygii genes detected out of a total of 3,698
  5. eWhen excluding pseudogenes, alternative transcripts, etc., the number of protein-coding genes is 20,095
  6. fProtein-coding genes only