Skip to main content

Table 1 The number of genes that are shifted from the consensus position. The first strain (ATCC393) is Lactobacillus casei and the rest are all Lb. paracasei. Only ATCC393 showed a different distribution and its standard deviation is the largest

From: Visualization of consensus genome structure without using a reference genome

Degree ATCC393(casei) KL1 CAUH35 N1115a JCM_8130 LOCK919 W56 12A Zhang BL23 L9 BD-II LC2W 8700 ATCC334 Average
0–5 537 1737 1547 1789 1778 1952 1787 2004 2311 1823 2287 1916 1794 2351 2393 1867
6–10 492 559 443 536 589 577 706 383 86 725 167 618 731 65 31 447
11–15 930 6 171 16 16 33 20 12 4 21 21 24 26 18 14 89
16–20 132 8 9 6 8 12 12 13 1 12 4 12 12 8 15 18
21–25 79 4 1 5 4 5 19 1 0 19 10 17 20 0 3 12
26–30 3 9 0 3 11 13 3 2 0 3 3 3 1 2 4 4
31–90 107 68 63 48 45 47 52 12 23 35 32 33 18 34 35 43
91–180 27 4 20 6 16 4 3 4 8 8 9 3 2 2 2 8
Median degree 11 4 3 2 3 2 3 3 3 3 2 3 2 2 1 3
Average deviation 19.4 9.9 8.6 6.8 6.1 5.8 4.4 4.4 4.4 4.3 4.2 4.2 4.1 3.6 3.4 6
Standard deviation 52.9 42.5 31.3 30.8 25.2 23.6 18.0 20.0 21.5 17.6 22.2 17.5 17.6 19.1 21.5 25
  1. aA large inversion of N1115 strain was manually modified