Table 1 The number of genes that are shifted from the consensus position. The first strain (ATCC393) is Lactobacillus casei and the rest are all Lb. paracasei. Only ATCC393 showed a different distribution and its standard deviation is the largest
From: Visualization of consensus genome structure without using a reference genome
Degree | ATCC393(casei) | KL1 | CAUH35 | N1115a | JCM_8130 | LOCK919 | W56 | 12A | Zhang | BL23 | L9 | BD-II | LC2W | 8700 | ATCC334 | Average |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0–5 | 537 | 1737 | 1547 | 1789 | 1778 | 1952 | 1787 | 2004 | 2311 | 1823 | 2287 | 1916 | 1794 | 2351 | 2393 | 1867 |
6–10 | 492 | 559 | 443 | 536 | 589 | 577 | 706 | 383 | 86 | 725 | 167 | 618 | 731 | 65 | 31 | 447 |
11–15 | 930 | 6 | 171 | 16 | 16 | 33 | 20 | 12 | 4 | 21 | 21 | 24 | 26 | 18 | 14 | 89 |
16–20 | 132 | 8 | 9 | 6 | 8 | 12 | 12 | 13 | 1 | 12 | 4 | 12 | 12 | 8 | 15 | 18 |
21–25 | 79 | 4 | 1 | 5 | 4 | 5 | 19 | 1 | 0 | 19 | 10 | 17 | 20 | 0 | 3 | 12 |
26–30 | 3 | 9 | 0 | 3 | 11 | 13 | 3 | 2 | 0 | 3 | 3 | 3 | 1 | 2 | 4 | 4 |
31–90 | 107 | 68 | 63 | 48 | 45 | 47 | 52 | 12 | 23 | 35 | 32 | 33 | 18 | 34 | 35 | 43 |
91–180 | 27 | 4 | 20 | 6 | 16 | 4 | 3 | 4 | 8 | 8 | 9 | 3 | 2 | 2 | 2 | 8 |
Median degree | 11 | 4 | 3 | 2 | 3 | 2 | 3 | 3 | 3 | 3 | 2 | 3 | 2 | 2 | 1 | 3 |
Average deviation | 19.4 | 9.9 | 8.6 | 6.8 | 6.1 | 5.8 | 4.4 | 4.4 | 4.4 | 4.3 | 4.2 | 4.2 | 4.1 | 3.6 | 3.4 | 6 |
Standard deviation | 52.9 | 42.5 | 31.3 | 30.8 | 25.2 | 23.6 | 18.0 | 20.0 | 21.5 | 17.6 | 22.2 | 17.5 | 17.6 | 19.1 | 21.5 | 25 |