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Table 1 Sequencing and mapping summary statistics for samples from field isolates and monkey-adapted strains

From: Whole-genome sequencing of a Plasmodium vivax clinical isolate exhibits geographical characteristics and high genetic variation in China-Myanmar border area

 

Field isolates

Monkey-adapted strains

 

C08a

C15a

M08 a

M19 a

CMB-1

Belemb

Sal-1c

Sequencing and Mapping

Read Pairs

231,291,984

79,414,201

215,643,747

85,703,544

120,797,632

81,446,663

215,743,944

Mapped on P. vivax

34,614,679

13,158,959

43,936,074

39,416,672

12,869,743

57,900,412

2,842,699

Mapped (%)

14.97

16.57

20.37

45.99

10.65

71.09

1.32

Mapped on Human

108,735,752

46,106,026

117,596,401

19,186,018

98,622,782

92,739

3,779,857

Mapped (%)

47.01

58.06

54.53

22.39

81.64

0.11

1.75

Coverage

Average coverage

102

70

218

117

62

418

20

Genome covered (%)

93.22

93.50

95.36

97.02

99.90

95.73

51.43

  1. aAdapted data from human clinical isolates: C08, C15, M08 and M19 [23]
  2. bAdapted data from monkey adapted strains: Belem [20]
  3. cAdapted data from monkey adapted strains: Salvador I [14]
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BMC Genomics

ISSN: 1471-2164

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