Table 2 Summary of sequence assembly after Illumina sequencing
From: Transcriptome profile of rat genes in injured spinal cord at different stages by RNA-sequencing
Sample name | Raw reads | Clean reads | clean bases | Error rate (%) | Q20 (%) | Q30 (%) | GC content (%) |
|---|---|---|---|---|---|---|---|
A1 | 44881934 | 40093612 | 6.01G | 0.02 | 95.33 | 88.31 | 50.28 |
A2 | 54272034 | 45508458 | 6.83G | 0.02 | 97.31 | 92.22 | 50.48 |
A3 | 46199060 | 41913544 | 6.29G | 0.02 | 96.3 | 90.38 | 49.91 |
B1 | 52270362 | 44613686 | 6.69G | 0.02 | 97.09 | 91.43 | 50.31 |
B2 | 47612764 | 43741790 | 6.56G | 0.02 | 96.03 | 89.63 | 50.16 |
B3 | 58619478 | 42207044 | 6.33G | 0.02 | 98.35 | 93.93 | 50.37 |
C1 | 47746200 | 44041564 | 6.61G | 0.02 | 96.17 | 89.9 | 50.37 |
C2 | 52818270 | 45368646 | 6.81G | 0.02 | 97.14 | 91.56 | 50.88 |
C3 | 41724966 | 40598352 | 6.09G | 0.03 | 94.79 | 87.81 | 50.96 |
D1 | 54673906 | 45455460 | 6.82G | 0.02 | 96.48 | 89.84 | 50.48 |
D2 | 41816080 | 40410590 | 6.06G | 0.03 | 94.79 | 87.89 | 50.6 |
D3 | 45601476 | 41583286 | 6.24G | 0.02 | 95.94 | 89.46 | 50.51 |