Plastome phylogeny and early diversification of Brassicaceae

BMC Genomics

Table 1 Comparison of tree topology hypotheses by using likelihood

Hypothesis	△lnL	AU	BP	PP	KH	WKH	SH	WSH
H1	Best	0.756	0.721	0.977	0.73	0.73	0.966	0.986
H2	3.7	0.297	0.273	0.023	0.27	0.27	0.693	0.555
H3	25.3	0.011	0.006	1.00E-11	0.014	0.014	0.176	0.026
H4	27.9	0.003	4.00E-05	7.00E-13	0.007	0.007	0.145	0.022
H5	118.1	8.00E-65	0	5.00E-52	0	0	0	0

Note: Tree Hypothesis: H1. This study; H2. (Other CladeA + Cardamineae) + Lepidieae; H3. (((A, E), (B, C)), F); H4. (((A, (B, C)), E), F); H5. Megadenia within Clade C. △lnL: the observed log-likelihood difference. AU approximately unbiased test, BP bootstrap probability test, PP approximate Bayesian posterior probability, KH Kishino-Hasegawa test, WKH weighted Kishino-Hasegawa test, SH Shimodaira-Hasegawa test, WSH weighted Shimodaira-Hasegawa test. P values >0.05 are in bold. The topology for each alternative hypothesis is provided in Additional file 2: Figure S1

ISSN: 1471-2164