Fig. 5

Visualization of individual ribosomal footprints mapping to rhyB. The genomic area is visualized in Artemis 15.0.0 [43]. In the lower part of the panels, the genome (shown as grey lines) is visualized in a six-frame translation mode. Numbers given between the grey lines indicate the genome coordinates. On top of the forward strand are three reading frames and on the reverse DNA strand are three further reading frames. Each reading frame represented is visible by the indicated stop codons (vertical black bars). Annotated genes are shown in their respective reading frame (turquoise arrows) and also on the DNA strand itself (white arrows). The gene name is written below each arrow. In the upper part of the panels, the DNA is indicated by a thin black line and the footprint reads (blue) matching to the forward or reverse strand are shown above or below this line. The shaded areas indicate ryhB (pink), the coding ORF RyhP (green) and a putative weak Shine-Dalgarno sequence (brown; ggagaa)