Table 3 Summary of gap patching and indel and SNP correction
Pseudomolecules | No. of contigs | No. of gaps closed | Gap bases patched | Initial contig length | Post gap-patching contig length | Bases gained | Indels corrected | SNP corrected |
|---|---|---|---|---|---|---|---|---|
Pp01 | 36 | 36 | 6,820 | 47,412,656 | 47,417,444 | 4,788 | 269 | 143 |
Pp02 | 27 | 27 | 6,884 | 29,982,897 | 29,985,295 | 2,398 | 185 | 117 |
Pp03 | 29 | 30 | 4,831 | 27,022,361 | 27,022,947 | 586 | 167 | 128 |
Pp04 | 24 | 24 | 3,895 | 25,545,546 | 25,549,276 | 3,730 | 133 | 132 |
Pp05 | 19 | 21 | 10,824 | 18,291,031 | 18,295,669 | 4,638 | 110 | 58 |
Pp06 | 25 | 26 | 9,635 | 30,419,305 | 30,423,361 | 4,056 | 197 | 117 |
Pp07 | 29 | 30 | 7,501 | 22,049,797 | 22,053,146 | 3,349 | 157 | 75 |
Pp08 | 17 | 18 | 3,485 | 22,391,144 | 22,392,798 | 1,654 | 129 | 89 |
Totals: | 206 | 212 | 53,875 | 223,114,737 | 223,139,936 | 25,199 | 1,347 | 859 |