Chromosome | No. of SNPs | Genome size (Mb) | Density of SNPs (1Â kb/SNP) | PIC | LD decay to half (Mb) |
---|---|---|---|---|---|
A1 | 1543 | 23.24 | 15.06 | 0.294 | 0.05–0.10 |
A2 | 1274 | 24.79 | 19.46 | 0.293 | 0.05–0.10 |
A3 | 2200 | 29.73 | 13.52 | 0.292 | 0.05–0.10 |
A4 | 1455 | 19.14 | 13.15 | 0.283 | 0.05–0.10 |
A5 | 1601 | 23.02 | 14.38 | 0.291 | 0.05–0.10 |
A6 | 1501 | 24.39 | 16.25 | 0.295 | 0.05–0.10 |
A7 | 1888 | 24.01 | 12.71 | 0.292 | 0.05–0.10 |
A8 | 1101 | 18.93 | 17.14 | 0.282 | 0.05–0.10 |
A9 | 1595 | 33.84 | 21.22 | 0.310 | 0.05–0.10 |
A10 | 1505 | 17.38 | 11.55 | 0.295 | 0.05–0.10 |
Mean A genome | 1566 | 23.85 | 15.44 | 0.293 | 0.05–0.10 |
C1 | 2279 | 38.77 | 17.01 | 0.277 | 0.75–1.00 |
C2 | 2114 | 46.19 | 21.85 | 0.312 | 0.75–1.00 |
C3 | 2563 | 60.56 | 23.63 | 0.293 | 0.05–0.10 |
C4 | 2886 | 48.89 | 16.94 | 0.302 | 0. 05–0.75 |
C5 | 890 | 43.08 | 48.4 | 0.291 | 0.05–0.10 |
C6 | 1191 | 37.19 | 31.23 | 0.295 | 0.05–0.10 |
C7 | 1545 | 44.48 | 28.79 | 0.284 | 0.10–0.25 |
C8 | 1451 | 38.30 | 26.42 | 0.290 | 0.05–0.10 |
C9 | 886 | 48.50 | 54.74 | 0.279 | 0.10–0.25 |
Mean C genome | 1756 | 45.11 | 29.89 | 0.292 | 1.25–1.50 |