Table 2 The InDel primer sequences used in this study

Primer name

Physical distance (bp) (02-12)

Forward primer sequence (5’-3’)

Reverse primer sequence (3’-5’)

BoID4673

C09:4123400

GAATCGAGACAGAACCGTAT

TAACGTTAACCGGATTGG

BoID4677

C09:4347473

TTAGCGTTTGTGTATTACCG

AAAGAACACAGAGGTTTGGA

BoID4697

C09:5350367

GGCTTTCTATCTGTCAAAAGG

GTTGGAGATTTTCTATCCGA

BoID4704

C09:5830712

TAATATTTGCGAGTGGAAGC

ATCCAGAACCGTCAATCTAA

BoID4707

C09:5940678

GTTTCACCCTTTGATCCTTT

TTCGCACCTTATCAAGTAGAG

M1

C09:5943643

TTGAGCTGCTTCCTTTAGTC

ACAGGAGTGGCATTTACATC

M15

C09:6139366

CTTACACGAACCTTCTCTCG

GGCCTGCATATAAACCTCTT

M17

C09:6312350

GAGGAGTCTACATGCGTTTC

TTGAGGGTAAAGTAGACGGA

BoID4714

C09:6592994

GCCTTAGCATCCAGAGATTA

ACGTCACAACGCTAATTACA

BoID4717

C09:7100587

TCCTGGATACGAAGTACCTG

TCCTAGAAACTTGTTGTCGC

BoID4794

C09:13019067

CATACTTGGAAGGAGCTTTG

CTCACAGTTTCTCCTTTTGG

BoID4798

C09:13119313

CGGATTAACACAGTGAAGAAG

AGATTTTGACCTTAGAAGCG

BoID4805

C09:13318893

ATATCGTCTGGCCCTCTATT

AGAACCCACAGAGACATCAC

BoID4814

C09:14085188

CCTTGGGATTTACAAGGTACT

GAGTAATCGAGAATTATGAGCC

BoID4837

C09:18142750

TGATACCTTTTGTCGAGCTT

ATTTGGGGTTGGTAGAAATC

BoID4863

C09:20025875

AGCAGTGCATGATACAAATG

CGGGCTGTCTAAATCATTA

Primer name

Physical distance (bp) (TO1000)

Forward primer sequence (5’-3’)

Reverse primer sequence (3’-5’)

BRID399

C09:10788227

GGTTGGATTTAGATTTGCTG

CTCCACCGTCATTGTATCAT

BRID471

C09:16850910

TCTAAAAGGAGAAGCCAGAA

GAGGGGAGATGAGGTTTACT

BRID472

C09:16879357

GTTTGAGTTTGTTTTGGGAG

GACTTGTAGCATTTGTCGTG

BRID482

C09:17010450

CATGCATTGAAAGTGTTGTC

AACTGAGCTTTCACACTGGT

BRID485

C09:17102497

CTTCTTGGAGGTCTCTTGTG

TGCACATTAAAACGGTAGG

BRID490

C09:17147250

TACTTGCATCAAATGTTGGG

GCACAGACTCATCTCCTTTC

BRID493

C09:17167025

AGCACTGAGACTACCCTTGA

CAGCTTTGTCTTGTGTCTGA

BRID494

C09:17205726

CGCCATATGAATAAAGGAAC

ACGAAGTCAACAAACAGCTT

BRID499

C09:17500985

ATGCGATGATGAGATAGCTT

AGATCCACTTCAATCCAATG

BRID505

C09:17643567

AACACATATTCCCGTCAAAC

GGAAAAGTGTGTTTTTGGG

BRID517

C09:17879063

AAATCATCCAAACCACTGTC

GTGCCTCTACTAGTTTTGGG

BRID530

C09:18485633

TTCAAGACTCTCCAGCTCAT

CAAGAGAAAGACTGGTTCGT