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Table 4 Genes under positive selection in Achimenes and Erythranthe related to flower development and pigmentation

From: Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

Gene

Description

UniProd ID

Species

Test

5MAT1

Malonyl-coenzyme:anthocyanin 5-O-glucoside-6”’-O-malonyltransferase

Q8W1W9

Ac

m12,m78

SFH13

Phosphatidylinositol/phosphatidylcholine transfer protein SFH13

Q501H5

Ac

m78

UBC28

Ubiquitin-conjugating enzyme E2 28

Q94F47

Ac

m78

Y5241

Probable receptor-like protein kinase at5g24010

Q9FLW0

Ac

m12

LECRK91

L-type lectin-domain containing receptor kinase

Q9LXA5

Ac

m12

GAUT14

Galactouronosyltransferase 14

Q8GWT1

Ac

m12

ABCB19

ABC transporter B family member 19

Q9LJX0

Ae

m12

ACR4

ACT domain-containing protein ACR4

Q8LJW3

Ae

m12

CYP90A1

Cytochrome P450 90A1

Q42569

Ae

m12

DCR

BAHD acyltransferase DCR

Q9FF86

Ae

m12

DFRA

Dihydroflavonol 4-reductase

P51102

Ae

m78

MAP70.2

Microtubule-associated protein 70-2

Q8L7S4

Ae

m12

TA14B

Transcription initiation factor TFIID subunit 14b

Q9FH40

Ae

m12

TKPR1

Tetraketide alpha-pyrone reductase 1

Q500U8

Ae

m12

GPPL2

Haloacid dehalogenase-like hydrolase domain-containing protein at3g48420

Q94K71

Ae

m12

HAT

Zinc finger bed domain-containing protein DAYSLEEPER

Q9M2N5

Ae

m12

KDSB

3-deoxy-manno-octulosonate

Q9C920

Ae

m12

BIG1

Brefeldin A-inhibited guanine nucleotide-exchange protein 1

FAJSZ5

Ae

m12

PRMT13

Probable histone-arginine methyltransferase 1.3

Q84W92

Am

m12

ATX1

Copper transport protein ATX1

Q94BT9

Am

m12

CYP71A1

Cytochrome P450 71A1

P24465

Am

m12

FLXL1

Protein FLX-like 1

Q93V84

Am

m12,m78

FRI

Protein FRIGIDA

P0DH90

Am

m12,m78

DTX41

Protein DETOXIFICATION 41

Q9LYT3

Am

m12

Y1301

BTB/POZ domain-containing protein at1g03010

Q9SA69

Am

m12

AKR2A

Ankyrin repeat domain-containing protein 2A

Q9SAR5

Ap

m78

CAF2M

CRS2-associated factor 2

Q9FFU1

Ap

m12

CKB2

Casein kinase II subunit beta-2

P40229

Ap

m12

GN

ARF guanine-nucleotide exchange factor GNOM

Q42510

Ap

m12

WNK1

Serine/threonine-protein kinase WNK1

Q9CAV6

Ap

m12

HDA19

Histone deactylase 19

O22446

Ap

m12

PRXQ

Peroxiredoxin chloroplastic

Q6UBI3

Ap

m12

CPK13

Calcium-dependent protein kinase 13

Q8W4I7

Ap

m12

LOL2

Protein LOL2

O65426

Ap

m12

EXO70A1

Exocyst complex component EXO70A1

Q9LZD3

Ap

m12

PRMT11

Protein arginine N-methyltransferase 1.1

Q9SU94

El

m12

BLH8

BEL1-like homeodomain protein 8

Q9SJJ3

El

m12

GDL15

GDSL esterase/lipase at1g29670

Q9C7N4

El

m12

GK-2

Guanylate kinase 2

Q9M682

El

m12

CUT1

3-ketoacyl-CoA synthase 6

Q9XF43

El

m12

AATL1

Lysine histidine transporter-like 8

Q9SX98

El

m12,m78

MAA3

Probable helicase MAGATAMA 3

B6SFA4

El

m12,m78

RH27

DEAD-box ATP-dependent RNA helicase 27

Q9SB89

El

m12

SOBIR1

Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1

Q9SKB2

El

m12

BRM

ATP-dependent helicase BRM

Q6EVK6

El

m12

AGO2

Protein argonaute 2

Q9SHF3

El

m12

ARID5

AT-rich interactive domain-containing protein 5

Q0WNR6

El

m12

  1. Abbreviations: Ac Achimenes cettoana, Ae Achimenes erecta, Am Achimenes misera, Ap Achimenes patens, El Erythranthe lewisii, m12 PAML model comparison m1a vs. m2a, m78 PAML model comparison m7 vs. m8