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Table 1 The top ten most up- or down-regulated genes by eight hr of forced Klf9 expression in HT22 [TR/TO-Klf9] cells (FDR-adjusted p value cutoff of .005)

From: The Krüppel-like factor 9 cistrome in mouse hippocampal neurons reveals predominant transcriptional repression via proximal promoter binding

Gene Symbol Gene name Log2 fold change
Klf13 Krüppel-like factor 13 −1.21
Rptoros Regulatory associated protein of MTOR, complex 1, opposite strand −1.12
Gpr161 G Protein-coupled receptor 161 −1.11
Apc2 Adenomatosis polyposis coli 2 −1.04
Zfp704 Zinc finger protein 704 −1.02
Arhgap39 Rho GTPase Activating Protein 39 −0.96
Armc7 Armadillo Repeat Containing 7 −0.95
Mex3a Mex-3 RNA Binding Family Member A −0.92
Wdfy2 WD Repeat And FYVE Domain Containing 2 −0.89
Nlgn2 Neuroligin2 −0.88
Frk Fyn-Related Src Family Tyrosine Kinase 0.43
1810043G02Rik RIKEN cDNA 1810043G02 0.46
4930430 F08Rik RIKEN cDNA 4930430 F08 0.47
2610301B20Rik RIKEN cDNA 2610301B20 0.48
Tctn2 Tectonic Family Member 2 0.49
Arxes2 adipocyte-related X-chromosome expressed sequence 2 0.51
Mitd1 Microtubule Interacting and Transport Domain Containing 1 0.51
Rilpl2 Rab Interacting Lysosomal Protein-Like 2 0.51
Zfp930 Zinc-finger protein 930 0.52
Cdkn3 Cyclin-Dependent Kinase Inhibitor 3 0.56
  1. The mRNA levels (counts) were evaluated by DESeq. Genes are ordered by log2 fold change (lowest to highest). A complete list of differentially regulated genes is given in The mRNA levels (counts) were evaluated by DESeq. Genes are ordered by log2 fold change (lowest to highest). A complete list of differentially regulated genes is given in Additional file 2: Table S1