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Table 6 Description and expression of up-regulated genes encoding transcription factors

From: Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

Gene ID

Descriptiona

Expression level (hpi)b

1

3

6

12

24

48

1. Zn2Cys6 (C6)

 SS1G_06255

Zn2 Cys6 transcription factor

7.0

4.6

3.9

2.4

-

-

 SS1G_14383

Zn2 Cys6 transcription factor

3.5

4.4

3.5

2.1

-

-

 SS1G_08819

Zn2 Cys6 transcription factor

3.6

2.5

2.1

3.0

-

-

 SS1G_06907

Zn2 Cys6 transcription factor

4.1

4.1

3.3

-

-

-

 SS1G_02793

Zn2 Cys6 transcription factor

6.0

3.0

-

-

-

-

 SS1G_10324

Zn2 Cys6 transcription factor

2.0

-

-

-

2.0

-

 SS1G_02851

Zn2 Cys6 transcription factor

2.2

-

-

-

-

-

 SS1G_12532

Zn2 Cys6 transcription factor

2.2

-

-

-

-

-

 SS1G_12799

Zn2 Cys6 transcription factor

-

2.5

2.5

-

-

-

 SS1G_11949

Zn2 Cys6 transcription factor

-

2.7

2.5

-

-

-

 SS1G_00732

Zn2 Cys6 transcription factor

-

2.4

-

5.0

-

-

 SS1G_00398

Zn2 Cys6 transcription factor

-

4.1

-

-

-

4.8

 SS1G_01905

Zn2 Cys6 transcription factor

-

-

-

-

2.7

-

 SS1G_06876

Zn2 Cys6 transcription factor

-

-

-

-

2.3

-

 SS1G_00170

Zn2 Cys6 transcription factor

-

-

-

-

2.3

-

 SS1G_02339

Zn2 Cys6 transcription factor

-

-

-

-

2.0

-

 SS1G_07143

Zn2 Cys6 transcription factor

-

-

-

-

2.7

-

 SS1G_02791

Zn2 Cys6 transcription factor

-

-

-

-

2.9

3.0

 SS1G_00392

Zn2 Cys6 transcription factor

-

-

-

-

2.2

2.2

 SS1G_13144

Zn2 Cys6 transcription factor

-

-

-

-

2.1

3.0

 SS1G_02054

Zn2 Cys6 transcription factor

-

-

-

-

6.6

36.9

 SS1G_05109

Zn2 Cys6 transcription factor

-

-

-

-

6.7

7.2

 SS1G_05755

Zn2 Cys6 transcription factor

-

-

-

-

2.6

3.8

 SS1G_07003

Zn2 Cys6 transcription factor

-

-

-

-

-

4.6

 SS1G_10447

Zn2 Cys6 transcription factor

-

-

-

-

-

2.5

 SS1G_01353

Zn2 Cys6 transcription factor

-

-

-

-

-

4.1

 SS1G_11367

Zn2 Cys6 transcription factor

-

-

-

-

-

3.3

 SS1G_08351

Zn2 Cys6 transcription factor

-

-

-

-

-

2.1

 SS1G_03775

Zn2 Cys6 transcription factor

-

-

-

-

-

6.8

 SS1G_00787

Zn2 Cys6 transcription factor

-

-

-

-

-

2.8

 SS1G_01733

Zn2 Cys6 transcription factor

-

-

-

-

-

2.6

 SS1G_04056

Zn2 Cys6 transcription factor

-

-

-

-

-

2.7

 SS1G_11081

Zn2 Cys6 transcription factor

-

-

-

-

-

2.8

 SS1G_09741

fungal specific transcription factor domain

2.2

3.7

3.9

2.7

-

-

 SS1G_04333

fungal specific transcription factor domain

2.0

2.3

2.0

-

-

-

 SS1G_12561

fungal specific transcription factor domain

2.3

2.1

-

-

-

-

 SS1G_09823

fungal specific transcription factor domain

-

-

2.1

-

2.2

2.4

 SS1G_04846

fungal specific transcription factor domain

-

-

-

-

2.6

4.0

 SS1G_13882

fungal specific transcription factor domain

-

-

-

-

2.0

-

 SS1G_13729

fungal specific transcription factor domain

-

-

-

-

2.4

-

 SS1G_02758

fungal specific transcription factor domain

-

-

-

-

2.5

-

 SS1G_08406

fungal specific transcription factor domain

-

-

-

-

2.3

-

 SS1G_05809

fungal specific transcription factor domain

-

-

-

-

3.9

-

 SS1G_04057

fungal specific transcription factor domain

-

-

-

-

-

2.4

 SS1G_11395

fungal specific transcription factor domain

-

-

-

-

-

2.3

 SS1G_06361

fungal specific transcription factor domain

-

-

-

-

-

2.1

2. Cys2His2

 SS1G_01109

C2H2 transcription factor

19.8

26.1

26.6

15.6

-

-

 SS1G_01684

C2H2 transcription factor

2.6

3.1

2.7

2.0

-

-

 SS1G_04676

C2H2 transcription factor

2.0

-

-

-

-

7.3

 SS1G_07355

C2H2 transcription factor (Pac1)

-

-

-

-

-

8.4

 SS1G_10532

C2H2 transcription factor

-

-

-

-

-

20.5

 SS1G_00104

C2H2 binding site

-

-

2.5

3.1

-

5.4

 SS1G_09588

C2H2 binding site

-

-

-

-

2.9

4.4

 SS1G_06370

C2H2 binding site

-

-

-

-

-

2.1

 SS1G_09499

C2H2 binding site

-

-

-

-

-

3.1

 SS1G_07425

C2H2 binding site

-

-

-

-

-

4.3

 SS1G_06044

C2H2 binding site

-

-

-

-

-

2.3

3. basic leucine zipper (bZIP)

 SS1G_10244

bZIP transciption factor

4.4

5.2

-

5.6

-

-

 SS1G_01411

bZIP transciption factor

-

-

-

-

2.0

-

 SS1G_00816

bZIP transciption factor

-

-

-

-

-

5.4

 SS1G_06075

bZIP transciption factor

-

-

-

-

-

7.7

4. Others

 SS1G_14328

transcription regulator BDF1

2.7

6.5

5.5

3.6

-

-

 SS1G_11030

CP2 transcription factor

4.9

3.2

2.5

-

-

-

 SS1G_04107

MYB family transcription factor

2.5

2.9

-

-

-

-

 SS1G_06257

pex2/pex12 superfamily, zinc finger of C3HC4-type

3.0

2.4

-

-

-

-

 SS1G_07430

zinc finger domain

3.0

-

-

-

-

2.8

 SS1G_03881

regulator of G protein signaling domain protein (RGS) (GTPase activating proteins (GAPs)

2.0

-

-

-

-

-

 SS1G_14385

CBF/Mak21 transcription factor

2.4

-

-

-

-

-

 SS1G_03280

helix-loop-helix dna-binding protein (HlH)

2.4

-

-

-

-

-

 SS1G_10206

CHY and ring, zinc finger protein

-

2.1

-

-

-

-

 SS1G_04050

NF-X1 zinc finger transcription factor

-

3.0

-

-

-

-

 SS1G_11663

large tegument protein UL36 and similar to TFIIIC transcription initiation factor complex subunits Tfc3

-

-

2.1

2.0

-

-

 SS1G_03992

transcription mediator subunit Med12

-

-

2.2

-

-

-

 SS1G_13930

Bro1-Alix- like domain and pH-response regulator protein

-

-

-

-

2.3

-

 SS1G_07542

RING-H2 zinc finger protein

-

-

-

-

2.3

-

 SS1G_06124

mads-box mef2 type transcription factor (SRF type)

-

-

-

-

-

3.5

 SS1G_03098

homeobox transcription factor

-

-

-

-

-

2.2

 SS1G_03835

homeobox C2H2 transcription factor

-

-

-

-

-

3.1

 SS1G_06987

yippee zinc-binding protein

-

-

-

-

-

2.4

 SS1G_01859

MYB dna-binding containing domain protein

-

-

-

-

-

6.2

 SS1G_08831

(vWA) transcription factor (Von Willebrand factor type A)

-

-

-

-

-

2.3

 SS1G_09890

RAP transcription factor

-

-

-

-

-

2.6

 SS1G_02756

transcription factor protein

-

-

-

-

-

8.5

 SS1G_10304

tetratricopeptide (TPR) repeat transcriptional corepressor

-

-

-

-

-

2.3

 SS1G_13511

lipopolysaccharide (LPS)-induced transcription factor and LITAF-like zinc ribbon domain

-

-

-

-

-

2.7

  1. aAnnotation based on the presence of conserved PFAM domains and BLAST reports
  2. bFold change relative to 0 h post inoculation (hpi). (-) No significant change in expression
  3. More information about the genes can be found in Additional file 3: Table S3
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BMC Genomics

ISSN: 1471-2164

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