Table 1 Pathway-focussed results: Number of PFEs supported by other methods suggestive of function
Gene | No. of PFEs identified | No. of PFEs contained | |||
|---|---|---|---|---|---|
EvoFold | DNase I footprints | RNAz | ncRNA transcripts (fRNAdb) | ||
eya1 | 6 | 5 | 6 | 0 | 1 |
eya4 | 2 | 1 | 1 | 0 | 0 |
pax3(ZFa)a | 7 | 5 | 4 | 0 | 1 |
pax3(ZFb) | 2 | 1 | 1 | 0 | 1 |
pax7(ZFb) | 6 | 4 | 3 | 3 | 0 |
shh(ZFa) | 2 | 0 | 1 | 0 | 0 |
myf5 | 1 | 0 | 1 | 1 | 0 |
six4.3 | 1 | 0 | 1 | 0 | 0 |
Total | 27 | 16 | 18 | 4 | 3 |