Skip to main content

Table 2 Shortest inversion distannce for each of the 9 groups of Escherichia coli

From: Core-genome scaffold comparison reveals the prevalence that inversion events are associated with pairs of inverted repeats

sG

cG

I n v d

inversion

l

IR

R d

1

2

1

(24,24)

0.0041

D(1)a

0

2

1

1

(-24,-24)

0.0041

D(0)a

0

3

1

2

(-7,-4)

0.2763

F(0)

0

   

(-19,-17)

0.1940

G(0)b

 

4

1

1

(-27,-11)

1.402

E(0)

0

5

1

1

(-25,-13)

1.111

H(0)

0

6

1

4

(-4,-3)

0.2706

I(0)

1

   

(-5,-5)

0.0075

–

 
   

(-45,37)

1.4108

J(0)

 
   

(-38,-29)

1.2756c

K(0)

 

7

1

3

(-43,-35)

0.0642

L(0)

0

   

(-42,35)

0.1055d

M(0)

 
   

(-41,-35)

0.3944e

L(0)

 

8

1

4

(In Additional

N/A

N/A

6

   

file 2)

   

9

1

1

(48,48)

0.0651

F(0)

1

  1. aIn Group 1, only Strain SE15 has +D/-D at the ends of 24
  2. bIn Group 2, only Strain O157:H7 str. Sakai has +G/-G at the ends of (-19,-17)
  3. c l=length of Block 38 + length from Block 29 to Block 37 in Group 6
  4. d l=length of Block 42 + length of Block 35 in Group 7
  5. e l=length from Block 41 to Block 36 + length of Block 35 in Group 7
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us