Table 4 SNPs-causing 9930-unique targets and hardwickii-unique targets confirmed by experiments
From: Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome
miRNAs | targets | Cleavage site | Function annotation |
|---|---|---|---|
9930-unique targets | |||
 miR159c | Csa5M146230.1 | 332 | TMPIT |
 miR171b | Csa6M040600.1 | 399 | GRAS |
 miR2111 | Csa4M016490.1 | 918 | Transferase |
 miR398a | Csa2M295970.1 | 1688 | PPR |
 miR399a | Csa4M001720.1 | 1378 | Glyco_hydro_1 |
 miR858 | Csa6M517090.1 | 1160 | Pkinase_Tyr;LRR_1 |
 csa-mir13 | Csa6M423430.1 | 2860 | RRM_2 |
 csa-mir17 | Csa4M303180.1 | 542 | UDPGT |
 csa-mir24 | Csa6M361370.1 | 1561 | dsRNA_bind;PAZ;helicase_dead;Ribonuclease_3 |
 csa-mir27 | Csa7M396360.1 | 1627 | ALG3 |
 csa-mir29 | Csa1M043010.1 | 427 | Hydrolase_4 |
 csa-mir45 | Csa4M290150.1 | 438 | Pkinase_Tyr;B_lectin |
 csa-mir46 | Csa1M029600.1 | 252 | EMP70 |
 csa-mir7 | Csa3M852500.1 | 1096 |  |
Hardwickii-unique targets | |||
 mir156e | evm.model.Chr3.3319 | 461 | UDPGT |
 mir169b | evm.model.Chr3.3978 | 552 | F-box |
 mir169b | evm.model.Chr5.1830 | 819 | DUF26 |
 mir171a | evm.model.Chr2.1408 | 927 | SET |
 mir396a | evm.model.Chr6.793 | 725 | PPR |
 mir396b | evm.model.Chr6.762 | 254 | Pro_isomerase |
 mir398b | evm.model.Chr3.334 | 965 | HMA;Sod_Cu |
 mir398b | evm.model.Chr7.266 | 4582 | PAS_2;Phytochrome;GAF;HATPase_c;PAS |
 mir408 | evm.model.Chr6.3144 | 924 | Ras |
 csa-mir11 | evm.model.Chr2.2052 | 1853 | DUF3490;Kinesin |
 csa-mir12 | evm.model.Chr1.775 | 1845 | Aldedh |
 csa-mir18 | evm.model.Chr2.326 | 1851 | Pkinase |
 csa-mir18 | evm.model.Chr7.634 | 1355 | HLH |
 csa-mir20 | evm.model.Chr3.488 | 489 | MoeZ_MoeB;ThiF;Rhodanese |
 csa-mir25 | evm.model.chr6.523.2 | 383 |  |