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Table 6 Significant diseases and functions enriched in the biological network (Fig. 3) obtained through Ingenuity® Pathway Analysis (IPA®)

From: Cross-disorder comparative analysis of comorbid conditions reveals novel autism candidate genes

Diseases or functions annotation

p-Value

Molecules

Proliferation of neuronal cells

1.95E-06

ADAM10, ADCYAP1R1, AKT1, APBB1, APP, CYP19A1, EGFR, ESR1, FKBP4, HBA1/HBA2, MAPK1, MMP2, NDE1, NFATC4, NRP1, Pkc(s), TP53

Growth of neurites

3.24E-06

ADAM10, AKT1, APBB1, APP, CYP19A1, EGFR, ESR1, FKBP4, HBA1/HBA2, MAPK1, MMP2, NFATC4, NRP1, pkc(s), TP53

Interphase of brain cells

8.22E-06

ADCYAP1R1, APP, TP53

Outgrowth of neurites

1.78E-05

ADAM10, AKT1, APBB1, APP, EGFR, ESR1, FKBP4, HBA1/HBA2, MAPK1, NFATC4, NRP1, Pkc(s), TP53

Behavior

1.98E-05

ADAM10, AGAP2, APBB1, APP, CYP19A1, ESR1, HBA1/HBA2, HDC, MAPK1, mir-103, MYBL1, NFATC4, NPPB, Pkc(s), PPP3CB, PRKG1, SHANK2, TP53, TRPV1, UCHL1

Alzheimer’s disease

5.88E-05

ADAM10, APBB1, APP, ESR1, FDFT1, HBA1/HBA2, LSS, mir-103, miR-125b-5p (and other miRNAs w/seed CCUGAG), MMP2, NFATC4, Pkc(s), TP53, UCHL1

Microtubule dynamics

7.64E-05

ABLIM1, ADAM10, AGAP2, AKT1, APP, CYP19A1, DUSP9, EGFR, ESR1, FKBP4, Hsp90, KIF24, MAPK1, NDE1, NFATC4, NRP1, Pkc(s), PPP3CB, PRKG1, PTPRE, TP53, UCHL1

Organization of cytoskeleton

7.78E-05

ABLIM1, ADAM10, AGAP2, AKT1, APP, CYP19A1, DUSP9, EGFR, ESR1, FKBP4, FLNC, Hsp90, KIF24, MAPK1, MGAT5, NDE1, NFATC4, NRP1, Pkc(s), PPP3CB, PRKG1, PTPRE, TP53, UCHL1

Branching of neurites

7.87E-05

ADAM10, AGAP2, AKT1, APP, CYP19A1, NFATC4, NRP1, PRKG1, TP53

Entry into S phase of cerebral cortex cells

1.18E-04

ADCYAP1R1, APP

Anxiety

1.65E-04

ADCYAP1R1, APP, HDC, MAPK1, NFATC4, SHANK2, TRPV1

Branching of cells

1.86E-04

ADAM10, AGAP2, AKT1, APP, BDKRB2, CYP19A1, NFATC4, NRP1, Pkc(s), PRKG1, TP53

Hyperactive behavior

1.92E-04

ADCYAP1R1, AKT1, APP, ESR1, PPP3CB, SHANK2

Development of central nervous system

2.07E-04

ADAM10, ADCYAP1R1, AKT1, APBB1, APP, CYP19A1, EGFR, MAPK1, NDE1, PRKG1, SETD2, TP53, TRPV1

Interphase of neural precursor cells

2.67E-04

ADCYAP1R1, TP53

Conditioning

2.87E-04

ADCYAP1R1, APP, ESR1, MAPK1, MMP2, TRPV1, UCHL1

Firing of neurons

2.97E-04

APP, MAPK1, NPPB, TRPV1

Locomotion

3.09E-04

AGAP2, APP, CYP19A1, ESR1, NFATC4, PPP3CB, TMOD1, TP53, UCHL1

Formation of brain

3.37E-04

ADAM10, ADCYAP1R1, APBB1, APP, CYP19A1, EGFR, NDE1, PRKG1, SETD2, TP53, TRPV1

Cell viability of neuroglia

3.48E-04

AKT1, APP, EGFR, TP53

Cell death of sympathetic neuron

3.96E-04

AGAP2, AKT1, APP, Pkc(s), TP53

Morphogenesis of neurites

4.00E-04

ADAM10, AGAP2, AKT1, APP, CYP19A1, EGFR, NFATC4, NRP1, PRKG1, TP53

Neuritogenesis

4.44E-04

ADAM10, AGAP2, AKT1, APP, CYP19A1, EGFR, NFATC4, NRP1, PRKG1, PTPRE, TP53, UCHL1

Formation of forebrain

5.97E-04

ADAM10, ADCYAP1R1, APBB1, APP, NDE1, PRKG1, SETD2

Migration of neurons

9.72E-04

ADAM10, APBB1, DGCR8, EGFR, NDE1, NRP1, PRKG1

Emotional behavior

1.06E-03

APP, CYP19A1, ESR1, MAPK1, NPPB, SHANK2, TRPV1

Schizophrenia spectrum disorder

1.21E-03

AKT1, APP, EGFR, ESR1, KCNH2, mir-103, Pkc(s), PPP3CB, SHANK2, SMARCA2

Long-term potentiation

1.22E-03

ADCYAP1R1, APP, CYP19A1, EGFR, MAPK1, Pkc(s), SHANK2, TRPV1

Cognition

1.52E-02

AKT1

  1. Our candidate genes are highlighted in bold