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Table 1 List of the “non-accommodated” genes after two successive bendings of young poplar stem

From: Poplar stem transcriptome is massively remodelled in response to single or repeated mechanical stimuli

Cluster

Id_Gene Poplar

Log2 expression fold-change

Id_Gene Ath

Ath Description (Alias)

1B0.5/C

2B0.5/1B24

4

Potri.010G041300

2.92

1.22

NULL

NULL

6

Potri.T131200

2.21

1.64

AT3G19680

Protein of unknown function (DUF1005)

6

Potri.008G159300

2.03

1.85

AT3G22930

Calmodulin-like 11 (CML11)

7

Potri.004G086900

1.28

0.78

NULL

NULL

7

Potri.006G055500

1.39

1.24

NULL

NULL

7

Potri.009G084000

1.38

1.24

AT1G10020

Protein of unknown function (DUF1005)

7

Potri.009G092900

1.44

1.2

AT2G14960

Auxin-responsive GH3 family protein (GH3.1)

7

Potri.016G132500

1.42

0.93

AT3G51710

D-mannose binding lectin protein with Apple-like carbohydrate-binding domain

8

Potri.001G309600

0.89

1.07

AT1G49230

RING/U-box superfamily protein

8

Potri.006G110000

1.2

0.78

AT3G51550

Malectin/receptor-like protein kinase family protein (FER)

8

Potri.006G141500

0.95

0.91

AT2G05940

Protein kinase superfamily protein

8

Potri.008G126800

1.12

0.89

AT2G01100

unknown

8

Potri.009G030600

0.97

0.81

AT2G28890

Poltergeist like 4 (PPL4)

8

Potri.010G081100

1.31

1.07

AT3G22910

ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein

8

Potri.012G126100

1.17

0.88

AT5G51460

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TPPA)

8

Potri.018G093600

1.22

0.94

AT5G57480

P-loop containing nucleoside triphosphate hydrolases superfamily protein

8

Potri.019G128100

0.93

1.01

AT2G30360

SOS3-interacting protein 4 (CIPK11)

9

Potri.001G344100

0.52

0.82

AT5G14500

Aldose 1-epimerase family protein

9

Potri.005G158400

0.59

0.79

AT1G02070

unknown

9

Potri.006G235800

0.73

0.98

AT5G25930

Protein kinase family protein with leucine-rich repeat domain

9

Potri.008G103300

0.64

0.83

AT5G49520

WRKY DNA-binding protein 48 (WRKY48)

9

Potri.010G132800

0.64

0.85

AT3G25600

Calcium-binding EF-hand family protein

9

Potri.013G115700

0.51

0.79

AT1G34300

Lectin protein kinase family protein

9

Potri.015G063500

0.76

0.78

AT3G47730

ATP-binding cassette A2 (ABCA2,ATH1)

9

Potri.017G000700

0.81

0.89

AT2G44130

Galactose oxidase/kelch repeat superfamily protein

10

Potri.006G021000

3.15

3.4

AT2G36450

Integrase-type DNA-binding superfamily protein (HRD)

11

Potri.012G048200

1.28

1.07

AT1G18210

Calcium-binding EF-hand family protein

12

Potri.002G126300

0.7

1.09

AT4G25000

Alpha-amylase-like (AMY1)

12

Potri.004G112700

0.83

1.48

AT5G15720

GDSL-motif lipase 7 (GLIP7)

13

Potri.005G056800

1.24

0.85

AT5G60900

Receptor-like protein kinase 1 (RLK1)

13

Potri.018G076500

1.31

0.84

AT3G24440

Fibronectin type III domain-containing protein (VIL1,VRN5)

14

Potri.003G159800

0.99

1.2

AT5G47910

Respiratory burst oxidase homologue D (RBOHD)

14

Potri.005G015300

0.9

0.86

NULL

NULL

14

Potri.005G055200

0.88

1.06

AT5G28680

Malectin/receptor-like protein kinase family protein (ANX2)

14

Potri.006G187900

0.89

0.82

AT2G24300

Calmodulin-binding protein

14

Potri.006G219100

1.03

1.04

AT1G72510

Protein of unknown function (DUF1677)

14

Potri.009G002200

0.82

0.95

AT5G22860

Serine carboxypeptidase S28 family protein

14

Potri.010G240800

0.5

0.89

AT5G04760

Duplicated homeodomain-like superfamily protein

14

Potri.013G125000

0.51

1.04

AT3G54420

Homolog of carrot EP3-3 chitinase (CHITIV)

14

Potri.013G130000

1.02

0.97

AT1G53050

Protein kinase superfamily protein

14

Potri.014G111800

0.67

1.23

AT4G01700

Chitinase family protein

14

Potri.017G013300

0.87

1.09

AT4G28400

Protein phosphatase 2C family protein

15

Potri.006G101400

1.75

1.5

AT5G01380

Homeodomain-like superfamily protein

  1. These genes are differentially expressed 0.5 h after a single bending and their regulation is not different whether one or two successive bendings are applied. Id_gene corresponds to the gene model found in the Phytozome database [55] for poplar or Arabidopsis (Ath). Log2 expression fold-change is shown for the different analyses: expression fold-change 0.5 h after a single bending compared to a control plant (1B0.5 h/Control) and expression fold-change after a second bending compared to the 24 h post-bending time-point (2B0.5 h/1B24h)
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BMC Genomics

ISSN: 1471-2164

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