Table 2 Number of copy number variants and structural variants identified
Patient # | FREEC | CNAseq | DELLY | ABySS | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Gains | Losses | Gains | Losses | Gains | Losses | Inv | Trans | Gains | Losses | Inv | Trans | |
42 | 10 | 29 | 8 | 11 | 0 | 0 | 0 | 1 | 4 | 11 | 1 | 8 |
55 | 8 | 22 | 17 | 7 | 0 | 0 | 0 | 2 | 0 | 5 | 1 | 2 |
58 | 8 | 18 | 5 | 8 | 0 | 2 | 0 | 1 | 2 | 10 | 2 | 1 |
41 | 14 | 13 | 13 | 16 | 10 | 60 | 16 | 19 | 4 | 23 | 0 | 4 |
59 | 8 | 18 | 7 | 10 | 0 | 2 | 0 | 2 | 4 | 17 | 2 | 11 |
43 | 14 | 18 | 5 | 5 | 0 | 3 | 0 | 0 | 16 | 25 | 1 | 5 |
51 | 6 | 19 | 13 | 11 | 0 | 0 | 0 | 0 | 30 | 113 | 5 | 21 |
45 | 9 | 12 | 11 | 9 | 1 | 1 | 0 | 1 | 5 | 14 | 2 | 7 |
Totals | 77 | 149 | 79 | 77 | 11 | 68 | 16 | 26 | 65 | 218 | 14 | 59 |