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Table 4 The expression patterns of related genes for anthocyanin biosynthesis and transportation

From: Transcriptomic profiling of two Pak Choi varieties with contrasting anthocyanin contents provides an insight into structural and regulatory genes in anthocyanin biosynthetic pathway

    FPKM
  Gene ID Gene annotation ‘G’ ‘P’
Biosynthetic genes in phenylpropanoid pathway Bra017210 Phenylalanine ammonia-lyase 1 3566.60 8616.42
Bra039777 Phenylalanine ammonia-lyase 2 930.36 7009.32
Bra006985 Phenylalanine ammonia-lyase 2 3299.06 18.24
Bra031266 4-coumarate--CoA ligase 2 216.25 624.71
Bra021637 Transcinnamate 4-monooxygenase 939.76 4518.74
Early Biosynthetic Genes Bra009101 Probable chalcone--flavonone isomerase 3 1281.89 5917.44
Bra037747 Flavonol synthase/flavanone 3-hydroxylase 0 26.11
Bra029212 Flavonol synthase 3 790.26 328.98
Late Biosynthetic Genes Bra027457 Dihydroflavonol-4-reductase 67.91 15507.10
Bra013652 Leucoanthocyanidin dioxygenase 79.26 11936.77
Bra019350 Leucoanthocyanidin dioxygenase 23.6186 4969.47
Bra035004 Anthocyanidin 3-O-glucosyltransferase 10.15 1736.71
Bra003021 Anthocyanidin 3-O-glucosyltransferase 5.63 1011.59
Bra038445 UDP-glycosyltransferase 75C1 56.36 10314.18
Bra011292 Caffeic acid 3-O-methyltransferase 1 19.03 276.83
Bra034600 Caffeoyl-CoA O-methyltransferase 1 1080.65 6484.01
Bra003009 Quercetin 3-O-methyltransferase 1 8040.55 568.33
Bra003707 Caffeic acid 3-O-methyltransferase OS 159.46 1.43
Transport genes in anthocyanin pathway Bra009033 Protein TRANSPARENT TESTA 12 22.96 3.61
Bra016610 ATPase 10, plasma membrane-type 0.30 63.40
Bra024452 ATPase 1, plasma membrane-type 6.84 199.33
Bra008570 Glutathione S-transferase F12 12.02 2134.23
Bra023602 Glutathione S-transferase F12 195.28 2391.95
  1. G’: Green-leafed variety; ‘P’: Purple-leafed variety