Table 1 Summary of the genomic reads from RKQQC and MCCFC aligned to the SCCL reference genome
Pgt race | RKQQC | MCCFC |
|---|---|---|
Total reads | 62,781,618 | 68,290,518 |
Aligned reads | 46,024,317 | 28,014,613 |
Proportion reads mapped | 73.31% | 41.02% |
Mean coverage depth | 81.72 | 49.56 |
Median coverage depth | 78 | 49 |
% of genome with no coverage | 15.52% | 24.24% |
% of genome with 5× coverage | 77.96% | 73.80% |
% of genome with ≥10× coverage | 75.07% | 70.82% |