Table 3 Assessment of the tentative functional impact of SNPs using SNPeffect program
SNP origin | Mean/Gene | Median/Gene | Max/Gene | Number Genes | Percentage Total Genes |
|---|---|---|---|---|---|
All SNPs in both isolates | |||||
Non-synonymous mutations | 3.11 | 1 | 106 | 8620 | 0.5455 |
Synonymous mutations | 4.48 | 1 | 88 | 9065 | 0.5737 |
No mutations | NA | NA | NA | 5526 | 0.3497 |
SNPs in RKQQC alone | |||||
Non-synonymous mutations | 2.81 | 1 | 106 | 8251 | 0.5222 |
Synonymous mutations | 4.09 | 1 | 84 | 8738 | 0.553 |
No mutations | NA | NA | NA | 5850 | 0.3703 |
SNPs in MCCFC alone | |||||
Non-synonymous mutations | 2.63 | 0 | 106 | 7751 | 0.4906 |
Synonymous mutations | 3.91 | 1 | 88 | 8196 | 0.5187 |
No mutations | NA | NA | NA | 6432 | 0.4071 |
SNPs differentiating RKQQC from MCCFC | |||||
Non-synonymous mutations | 1.83 | 0 | 96 | 6624 | 0.4192 |
Synonymous mutations | 2.6 | 0 | 71 | 7323 | 0.4635 |
No mutations | NA | NA | NA | 7247 | 0.4587 |