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Table 1 Shearwaterpox virus (SWPV) genome annotations and comparative analysis of ORFs relative to CNPV genomes

From: Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.)

SWPV1 synteny SWPV2 synteny CNPV synteny CNPV BLAST hits SWPV1 % identity SWPV2 % identity SWPV1 AA size SWPV2 AA size Reference AA size notes
   CNPV001 CNPV001 hypothetical protein      72  
  SWPV2-001 CNPV002 CNPV002 hypothetical protein   92.941   171 171  
SWPV1-001 SWPV2-002 CNPV003 CNPV003 C-type lectin-like protein 32.044 85.99 181 208 204  
SWPV1-002   CNPV004 CNPV004 ankyrin repeat protein 56.458   468   514  
SWPV1-003 SWPV2-003 CNPV005 CNPV005 conserved hypothetical protein 87.387 99.55 220 222 222  
  SWPV2-004 CNPV006 CNPV006 hypothetical protein   88.71   134 182 SWPV2: C-terminus fragment, not likely translated
   CNPV007 CNPV007 ankyrin repeat protein      674  
SWPV1-004 SWPV2-005 CNPV008 CNPV008 C-type lectin-like protein 50 98.225 174 169 169  
  SWPV2-006 CNPV009 CNPV009 ankyrin repeat protein   99.564   688 688  
   CNPV010 CNPV010 ankyrin repeat protein      734  
  SWPV2-007 CNPV011 CNPV011 ankyrin repeat protein   99.147   586 586  
  SWPV2-008 CNPV012 CNPV012 hypothetical protein   100   189 189  
  SWPV2-009 CNPV013 CNPV013 hypothetical protein   98.81   168 168  
  SWPV2-010 CNPV014 CNPV014 immunoglobulin-like domain protein   99.184   490 490  
  SWPV2-011 CNPV015 CNPV015 ankyrin repeat protein   97.538   528 528  
SWPV1-005    CNPV035 C-type lectin-like protein 35.556   138   134  
SWPV1-006    CNPV318 ankyrin repeat protein 58.932   487   514  
SWPV1-007 SWPV2-012 CNPV016 CNPV016 C-type lectin-like protein 52.128 98.81 117 168 168  
SWPV1-008 SWPV2-013 CNPV017 CNPV017 ankyrin repeat protein 64.471 97.912 425 479 486  
SWPV1-009    CNPV295 ankyrin repeat protein 56.41   277   396  
  SWPV2-014 CNPV018 CNPV018 IL-10-like protein   90.805   190 191  
  SWPV2-015 CNPV019 CNPV019 ankyrin repeat protein   99.083   436 436  
SWPV1-010 SWPV2-016 CNPV020 CNPV020 ankyrin repeat protein 56.311 99.761 412 419 419  
SWPV1-011    CNPV320 Ig-like domain protein 31.656   483   469  
SWPV1-012 SWPV2-017 CNPV021 CNPV021 ankyrin repeat protein 62.313 99.626 528 535 535  
SWPV1-013 SWPV2-018 CNPV022 CNPV022 putative serpin 65.642 98.324 356 358 358  
SWPV1-014    PEPV260 ankyrin repeat protein 53.158   190   192  
SWPV1-015    CNPV011 ankyrin repeat protein 34   530   586  
  SWPV2-019 CNPV023 CNPV023 vaccinia C4L/C10L-like protein   98.595   424 427  
  SWPV2-020 CNPV024 CNPV024 hypothetical protein   96.629   178 178  
SWPV1-016 SWPV2-021 CNPV025 CNPV025 alpha-SNAP-like protein 57.491 98.667 304 300 300  
SWPV1-017 SWPV2-022 CNPV026 CNPV026 ankyrin repeat protein 54.271 98.953 397 382 382  
SWPV1-018 SWPV2-023 CNPV027 CNPV027 ankyrin repeat protein 59.375 98.722 646 626 626  
SWPV1-019 SWPV2-024 CNPV028 CNPV028 ankyrin repeat protein 57.618 99.164 408 365 362  
SWPV1-020 SWPV2-025 CNPV029 CNPV029 C-type lectin-like protein 50.35 99.296 142 142 142  
SWPV1-021 SWPV2-026 CNPV030 CNPV030 ankyrin repeat protein 63.72 98.529 345 340 340  
SWPV1-022 SWPV2-027 CNPV031 CNPV031 hypothetical protein 60.331 97.479 120 119 119  
SWPV1-023    CNPV013 conserved hypothetical protein 44.048   168   168  
SWPV1-024 SWPV2-028 CNPV032 CNPV032 Ig-like domain putative IFN-gamma binding protein 51.837 92.149 242 242 242  
SWPV1-025 SWPV2-029 CNPV033 CNPV033 Ig-like domain protein 48.095 93.496 238 246 246  
  SWPV2-030 CNPV034 CNPV034 ankyrin repeat protein   99.848   659 659  
  SWPV2-031 CNPV035 CNPV035 C-type lectin-like protein   94.776   133 134  
SWPV1-026 SWPV2-032 CNPV036 CNPV036 conserved hypothetical protein 48.235 98.947 88 95 95  
SWPV1-027 SWPV2-033 CNPV037 CNPV037 conserved hypothetical protein 63.068 99.441 178 179 179  
SWPV1-028 SWPV2-034 CNPV038 CNPV038 vaccinia C4L/C10L-like protein 54.523 99.516 411 413 413  
SWPV1-029 SWPV2-035 CNPV039 CNPV039 G protein-coupled receptor-like protein 67.284 97.859 323 327 327  
SWPV1-030 SWPV2-036 CNPV040 CNPV040 ankyrin repeat protein 57.36 93.401 589 591 591 SWPV2: High SNP Density
SWPV1-031 SWPV2-037 CNPV041 CNPV041 ankyrin repeat protein 66.284 98.605 432 430 430  
SWPV1-032 SWPV2-038 CNPV042 CNPV042 ankyrin repeat protein 72.712 99.339 608 605 605  
SWPV1-033 SWPV2-039 CNPV043 CNPV043 conserved hypothetical protein 74.627 99.005 202 201 201  
SWPV1-034 SWPV2-040 CNPV044 CNPV044 ankyrin repeat protein 67.316 99.583 470 480 480  
SWPV1-035 SWPV2-041 CNPV045 CNPV045 G protein-coupled receptor-like protein 65.231 100 331 332 332  
SWPV1-036 SWPV2-042 CNPV046 CNPV046 ankyrin repeat protein 68.08 98.667 452 450 450  
SWPV1-037 SWPV2-043 CNPV047 CNPV047 conserved hypothetical protein 65.6 99.194 125 124 124  
SWPV1-038 SWPV2-044 CNPV048 CNPV048 alkaline phosphodiesterase-like protein 68.238 98.502 804 801 801  
SWPV1-039 SWPV2-045 CNPV049 CNPV049 hypothetical protein 72.667 100 148 150 150  
SWPV1-040 SWPV2-046 CNPV050 CNPV050 ankyrin repeat protein 67.422 98.864 352 352 352  
SWPV1-041 SWPV2-047 CNPV051 CNPV051 DNase II-like protein 63.683 96.75 398 408 401  
SWPV1-042 SWPV2-048 CNPV052 CNPV052 C-type lectin-like protein 50 100 182 171 171  
SWPV1-043    FWPV ankyrin repeat protein 45   329   406  
SWPV1-044 SWPV2-049 CNPV053 CNPV053 conserved hypothetical protein 68.148 100 135 146 146  
SWPV1-045 SWPV2-050 CNPV054 CNPV054 conserved hypothetical protein 62.59 99.286 141 140 140  
SWPV1-046 SWPV2-051 CNPV055 CNPV055 conserved hypothetical protein 74.534 100 162 163 163  
SWPV1-047 SWPV2-052 CNPV056 CNPV056 dUTPase 80.986 98.621 155 145 145  
SWPV1-048 SWPV2-053 CNPV057 CNPV057 putative serpin 63.107 99.02 301 306 306  
SWPV1-049 SWPV2-054 CNPV058 CNPV058 bcl-2 like protein 51.744 98.857 174 180 175  
SWPV1-050 SWPV2-055 CNPV059 CNPV059 putative serpin 71.302 99.704 338 338 338  
SWPV1-051 SWPV2-056 CNPV060 CNPV060 conserved hypothetical protein 46.939 95.098 236 206 316 SWPV2: Large internal deletion, Translated but not likely functional
SWPV1-052 SWPV2-057 CNPV061 CNPV061 DNA ligase 80.995 98.761 567 565 565  
SWPV1-053 SWPV2-058 CNPV062 CNPV062 putative serpin 70.94 100 349 350 350  
SWPV1-054 SWPV2-059 CNPV063 CNPV063 hydroxysteroid dehydrogenase-like protein 71.348 99.441 359 358 358  
SWPV1-055 SWPV2-060 CNPV064 CNPV064 TGF-beta-like protein 56.897 98.587 272 283 282  
SWPV1-056 SWPV2-061 CNPV065 CNPV065 semaphorin-like protein 69.735 99.485 573 583 583  
SWPV1-057 SWPV2-062 CNPV066 CNPV066 hypothetical protein 37.349 98.519 139 399 405 SWPV1: Low BLAST hits, possible unique ORF
  SWPV2-063 CNPV067 CNPV067 hypothetical protein   100   57 57  
SWPV1-058    no significant BLAST hits      239 SWPV1: Possible Unique ORF
SWPV1-059 SWPV2-064 CNPV068 CNPV068 GNS1/SUR4-like protein 84.825 99.611 257 257 257  
SWPV1-060 SWPV2-065 CNPV069 CNPV069 late transcription factor VLTF-2 87.5 100 154 155 155  
SWPV1-061 SWPV2-066 CNPV070 CNPV070 putative rifampicin resistance protein, IMV assembly 88.065 100 553 551 551  
SWPV1-062 SWPV2-067 CNPV071 CNPV071 mRNA capping enzyme small subunit 89.273 100 289 289 289  
  SWPV2-068 CNPV072 CNPV072 CC chemokine-like protein   96.262   132 312 SWPV2: N-terminus fragment
SWPV1-063 SWPV2-069 CNPV073 CNPV073 hypothetical protein 45.263 100 110 109 109  
SWPV1-064 SWPV2-070 CNPV074 CNPV074 NPH-I, transcription termination factor 92.756 99.685 635 635 635  
SWPV1-065 SWPV2-071 CNPV075 CNPV075 mutT motif putative gene expression regulator 79.295 100 226 228 230  
SWPV1-066 SWPV2-072 CNPV076 CNPV076 mutT motif 84.549 99.569 233 232 232  
   CNPV077 CNPV077 hypothetical protein      78  
SWPV1-067    CNPV011 ankyrin repeat protein 29.806   435   586  
SWPV1-068 SWPV2-073 CNPV078 CNPV078 RNA polymerase subunit RPO18 82.39 100 161 160 160  
  SWPV2-074 CNPV079 CNPV079 Ig-like domain protein   94.161   274 272  
SWPV1-069 SWPV2-075 CNPV080 CNPV080 early transcription factor small subunit VETFS 96.682 100 633 633 633  
  SWPV2-076 CNPV081 CNPV081 Ig-like domain protein   97.006   334 333  
SWPV1-070 SWPV2-077 CNPV082 CNPV082 NTPase, DNA replication 88.818 99.748 790 794 794  
SWPV1-071 SWPV2-078 CNPV083 CNPV083 CC chemokine-like protein 60.352 91.855 223 221 221  
SWPV1-072    CNPV215 CC chemokine-like protein 30.994   195   204  
SWPV1-073 SWPV2-079 CNPV084 CNPV084 uracil DNA glycosylase 86.364 97.706 220 218 218  
SWPV1-074 SWPV2-080 CNPV085 CNPV085 putative RNA phosphatase 67.895 74.312 245 303 403 SWPV2: High SNP Density
SWPV1-075    CNPV216 conserved hypothetical protein 39.225   398   404  
SWPV1-076 SWPV2-081 CNPV086 CNPV086 TNFR-like protein 67.327 71.569 103 112 117  
  SWPV2-082 CNPV087 CNPV087 putative glutathione peroxidase   98.473   131 198 SWPV2: C-terminus fragment, not likely translated
SWPV1-077    CNPV227 N1R/p28-like protein 74.638   256   359  
SWPV1-078 SWPV2-083 CNPV088 CNPV088 conserved hypothetical protein 55.769 97 104 100 100  
SWPV1-079 SWPV2-084 CNPV089 CNPV089 conserved hypothetical protein 64.935 100 164 159 159  
SWPV1-080 SWPV2-085 CNPV090 CNPV090 conserved hypothetical protein 62.393 100 124 127 127  
SWPV1-081 SWPV2-086 CNPV091 CNPV091 HT motif protein 64.634 100 77 83 83  
SWPV1-082 SWPV2-087 CNPV092 CNPV092 conserved hypothetical protein 64.901 97.945 140 146 146  
SWPV1-083 SWPV2-088 CNPV093 CNPV093 virion protein 60.37 99.625 270 267 267  
SWPV1-084 SWPV2-089 CNPV094 CNPV094 T10-like protein 75 98.909 282 275 275  
SWPV1-085 SWPV2-090 CNPV095 CNPV095 conserved hypothetical protein 71.111 100 47 45 45  
SWPV1-086 SWPV2-091 CNPV096 CNPV096 ubiquitin 100 100 77 85 85  
SWPV1-087 SWPV2-092 CNPV097 CNPV097 conserved hypothetical protein 70.031 99.705 298 339 339  
SWPV1-088 SWPV2-093 CNPV098 CNPV098 hypothetical protein 67.442 98.75 61 80 80  
SWPV1-089 SWPV2-094 CNPV099 CNPV099 beta-NGF-like protein 62.162 97.949 186 195 195  
SWPV1-090 SWPV2-095 CNPV100 CNPV100 putative interleukin binding protein 51.176 98.225 211 168 169  
  SWPV2-096 CNPV101 CNPV101 hypothetical protein   98.824   85 85  
SWPV1-091 SWPV2-097 CNPV102 CNPV102 conserved hypothetical protein 54.167 99.048 102 105 105  
SWPV1-092 SWPV2-098 CNPV103 CNPV103 N1R/p28-like protein 62.304 98.947 188 190 190  
SWPV1-093 SWPV2-099 CNPV104 CNPV104 putative glutaredoxin 2, virion morphogenesis 86.4 99.2 125 125 125  
SWPV1-094 SWPV2-100 CNPV105 CNPV105 conserved hypothetical protein 77.35 98.718 234 234 234  
SWPV1-095 SWPV2-101 CNPV106 CNPV106 putative elongation factor 76.829 98.039 103 102 102  
  SWPV2-102 CNPV107 CNPV107 hypothetical protein   100   77 77  
SWPV1-096    PEPV083 transforming growth factor B 64   444   336  
SWPV1-097 SWPV2-103 CNPV108 CNPV108 putative metalloprotease, virion morphogenesis 85.489 100 633 632 632  
SWPV1-098 SWPV2-104 CNPV109 CNPV109 NPH-II, RNA helicase 86.05 99.706 681 681 681  
SWPV1-099 SWPV2-105 CNPV110 CNPV110 virion core proteinase 87.441 99.763 421 422 422  
SWPV1-100 SWPV2-106 CNPV111 CNPV111 DNA-binding protein 80.612 99.488 391 391 391  
SWPV1-101 SWPV2-107 CNPV112 CNPV112 putative IMV membrane protein 81.481 100 81 81 81  
SWPV1-102 SWPV2-108 CNPV113 CNPV113 thymidine kinase 75.978 99.441 181 179 179  
SWPV1-103 SWPV2-109 CNPV114 CNPV114 HT motif protein 69.62 100 79 82 82  
SWPV1-104 SWPV2-110 CNPV115 CNPV115 DNA-binding phosphoprotein 71.429 82.353 282 289 289 SWPV2: High SNP density
SWPV1-105 SWPV2-111 CNPV116 CNPV116 unnamed protein product 73.913 98.551 66 69 69  
SWPV1-106 SWPV2-112 CNPV117 CNPV117 DNA-binding virion protein 88.854 99.677 314 310 310  
SWPV1-107 SWPV2-113 CNPV118 CNPV118 conserved hypothetical protein 75.762 99.387 656 652 653  
SWPV1-108 SWPV2-114 CNPV119 CNPV119 virion core protein 83.969 100 131 131 131  
SWPV1-109 SWPV2-115 CNPV120 CNPV120 putative IMV redox protein, virus assembly 80.851 100 94 93 93  
SWPV1-110 SWPV2-116 CNPV121 CNPV121 DNA polymerase 89.17 99.899 988 988 988  
SWPV1-111   CNPV122 CNPV122 putative membrane protein 83.088   273   274  
SWPV1-112 SWPV2-117 CNPV123 CNPV123 conserved hypothetical protein 82.312 85.336 571 502 571 SWPV2: High SNP density
SWPV1-113 SWPV2-118 CNPV124 CNPV124 variola B22R-like protein 67 98.957 1906 1916 1918  
SWPV1-114 SWPV2-119 CNPV125 CNPV125 variola B22R-like protein 71.669 99.66 1742 1767 1767  
SWPV1-115 SWPV2-120 CNPV126 CNPV126 variola B22R-like protein 64.456 98.847 1902 1839 1951 SWPV2: N-terminus fragment
  SWPV2-121   CNPV126 variola B22R-like protein   96   153 1951 SWPV2: C-terminus fragment, not likely translated
SWPV1-116 SWPV2-122 CNPV127 CNPV127 RNA polymerase subunit RPO30 96.154 100 182 182 182  
SWPV1-117 SWPV2-123 CNPV128 CNPV128 conserved hypothetical protein 77.072 98.752 742 721 721 SWPV2: High SNP Density
SWPV1-118 SWPV2-124 CNPV129 CNPV129 poly(A) polymerase large subunit PAPL 83.898 99.788 472 472 472  
SWPV1-119 SWPV2-125 CNPV130 CNPV130 DNA-binding virion core protein 76.471 100 114 119 119  
SWPV1-120 SWPV2-126 CNPV131 CNPV131 conserved hypothetical protein 64.115 99.517 212 207 207  
SWPV1-121 SWPV2-127 CNPV132 CNPV132 conserved hypothetical protein 81.081 99.324 151 148 148  
SWPV1-122 SWPV2-128 CNPV133 CNPV133 conserved hypothetical protein 73.737 100 90 99 99  
SWPV1-123 SWPV2-129 CNPV134 CNPV134 variola B22R-like protein 65.517 99.001 1774 1801 1801  
SWPV1-124 SWPV2-130 CNPV135 CNPV135 putative palmitylated EEV envelope lipase 89.418 99.735 378 378 378  
SWPV1-125 SWPV2-131 CNPV136 CNPV136 putative EEV maturation protein 75.602 99.68 622 625 625  
SWPV1-126 SWPV2-132 CNPV137 CNPV137 conserved hypothetical protein 62.26 98.925 467 462 465  
SWPV1-127 SWPV2-133 CNPV138 CNPV138 putative serine/threonine protein kinase, virus assembly 83.632 100 445 444 444  
SWPV1-128 SWPV2-134 CNPV139 CNPV139 conserved hypothetical protein 81.69 100 213 213 213  
SWPV1-129 SWPV2-135 CNPV140 CNPV140 conserved hypothetical protein 78.788 100 65 66 66  
SWPV1-130 SWPV2-136 CNPV141 CNPV141 HAL3-like domain protein 88.333 100 182 184 184  
SWPV1-131    no significant BLAST hits 28   101   571 SWPV1: Possible Unique ORF
SWPV1-132 SWPV2-137 CNPV142 CNPV142 N1R/p28-like protein 48.266 98.442 314 321 321  
SWPV1-133 SWPV2-138 CNPV143 CNPV143 ankyrin repeat protein 54.103 98.361 634 671 671  
SWPV1-134 SWPV2-139 CNPV144 CNPV144 ankyrin repeat protein 59.011 99.281 562 556 556  
SWPV1-135 SWPV2-140 CNPV145 CNPV145 conserved hypothetical protein 75.814 100 439 440 440  
SWPV1-136 SWPV2-141 CNPV146 CNPV146 RNA polymerase subunit RPO7 88.525 100 66 62 62  
SWPV1-137 SWPV2-142 CNPV147 CNPV147 conserved hypothetical protein 80.851 100 188 188 188  
SWPV1-138 SWPV2-143 CNPV148 CNPV148 virion core protein 86.533 100 347 348 348  
  SWPV2-144 CNPV149 CNPV149 putative thioredoxin binding protein   99.673   306 306  
   CNPV150 CNPV150 ankyrin repeat protein      351  
  SWPV2-145 CNPV151 CNPV151 ankyrin repeat protein   99.029   412 412  
  SWPV2-146 CNPV152 CNPV152 hypothetical protein   98   149 187 SWPV2: C-terminus fragment, not likely translated
  SWPV2-147 CNPV153 CNPV153 Rep-like protein   99.359   312 312  
SWPV1-139    CNPV159 N1R/p28-like protein 78.488   333   337  
SWPV1-140    FWPV121 CC chemokine-like protein 46   93   121  
SWPV1-141 SWPV2-148 CNPV154 CNPV154 variola B22R-like protein 90.067 98.286 1939 875 1928 SWPV2: N-terminus fragment/SWPV1: Low SNP Density
SWPV1-142 SWPV2-149 CNPV155 CNPV155 variola B22R-like protein 82.427 99.454 1810 1831 1830  
  SWPV2-150 CNPV156 CNPV156 hypothetical protein   96.287   834 832  
  SWPV2-151 CNPV157 CNPV157 TGF-beta-like protein   87.679   343 349  
   CNPV158 CNPV158 TGF-beta-like protein      172  
   CNPV159 CNPV159 N1R/p28-like protein      337  
   CNPV160 CNPV160 N1R/p28-like protein      396  
  SWPV2-152 CNPV161 CNPV161 TGF-beta-like protein   99.441   358 358  
  SWPV2-153 CNPV162 CNPV162 TGF-beta-like protein   97.987   149 149  
   CNPV163 CNPV163 hypothetical protein      92  
   CNPV164 CNPV164 hypothetical protein      98  
  SWPV2-154 CNPV165 CNPV165 N1R/p28-like protein   98.75   320 346 SWPV2: C-terminus fragment, not likely translated
SWPV1-143 SWPV2-155 CNPV166 CNPV166 Ig-like domain protein 96.812 95.652 345 345 345 SWPV1: Low SNP Density
SWPV1-144 SWPV2-156 CNPV167 CNPV167 Ig-like domain protein 94.767 88.372 172 168 171 SWPV1: Low SNP Density
  SWPV2-157 CNPV168 CNPV168 N1R/p28-like protein   96   350 358  
SWPV1-145   CNPV169 CNPV169 N1R/p28-like protein 83.578   337   332 SWPV1: CNPV-168/169 Fusion
SWPV1-146 SWPV2-158 CNPV170 CNPV170 thymidylate kinase 100 100 121 212 212 SWPV1: N-terminus fragment
SWPV1-147 SWPV2-159 CNPV171 CNPV171 late transcription factor VLTF-1 96.923 100 260 260 260  
SWPV1-148 SWPV2-160 CNPV172 CNPV172 putative myristylated protein 83.125 99.403 336 335 335  
SWPV1-149 SWPV2-161 CNPV173 CNPV173 putative myristylated IMV envelope protein 91.358 98.354 243 243 243  
SWPV1-150 SWPV2-162 CNPV174 CNPV174 conserved hypothetical protein 47.917 100 96 96 96  
SWPV1-151 SWPV2-163 CNPV175 CNPV175 conserved hypothetical protein 84.158 100 303 303 303  
SWPV1-152 SWPV2-164 CNPV176 CNPV176 DNA-binding virion core protein 87.747 100 253 252 252  
SWPV1-153 SWPV2-165 CNPV177 CNPV177 conserved hypothetical protein 84.733 100 131 130 130  
SWPV1-154 SWPV2-166 CNPV178 CNPV178 putative IMV membrane protein 85.135 100 148 148 148  
SWPV1-155 SWPV2-167 CNPV179 CNPV179 poly(A) polymerase small subunit PAPS 88.667 100 300 302 302  
SWPV1-156 SWPV2-168 CNPV180 CNPV180 RNA polymerase subunit RPO22 87.634 99.462 186 186 186  
SWPV1-157 SWPV2-169 CNPV181 CNPV181 conserved hypothetical protein 82.353 100 136 136 136  
SWPV1-158 SWPV2-170 CNPV182 CNPV182 RNA polymerase subunit RPO147 93.866 99.922 1288 1288 1288  
SWPV1-159 SWPV2-171 CNPV183 CNPV183 putative protein-tyrosine phosphatase, virus assembly 85.542 100 166 166 166  
SWPV1-160 SWPV2-172 CNPV184 CNPV184 conserved hypothetical protein 91.534 100 190 189 189  
SWPV1-161 SWPV2-173 CNPV185 CNPV185 ankyrin repeat protein 32.632 96.341 337 328 328  
SWPV1-162 SWPV2-174 CNPV186 CNPV186 IMV envelope protein 100 100 329 330 330  
SWPV1-163 SWPV2-175 CNPV187 CNPV187 RNA polymerase associated protein RAP94 91.114 99.75 799 799 799  
SWPV1-164 SWPV2-176 CNPV188 CNPV188 late transcription factor VLTF-4 70.115 92.941 170 170 170  
SWPV1-165 SWPV2-177 CNPV189 CNPV189 DNA topoisomerase 88.608 99.684 316 316 316  
SWPV1-166 SWPV2-178 CNPV190 CNPV190 conserved hypothetical protein 77.124 99.346 153 153 153  
SWPV1-167 SWPV2-179 CNPV191 CNPV191 conserved hypothetical protein 70.874 99.029 103 103 103  
SWPV1-168 SWPV2-180 CNPV192 CNPV192 mRNA capping enzyme large subunit 88.221 99.764 848 846 846  
SWPV1-169 SWPV2-181 CNPV193 CNPV193 HT motif protein 72.619 100 104 106 106  
SWPV1-170 SWPV2-182 CNPV194 CNPV194 virion protein 71.223 100 139 140 140  
SWPV1-171 SWPV2-183 CNPV195 CNPV195 hypothetical protein 51.2 98.611 139 144 144  
SWPV1-172 SWPV2-184 CNPV196 CNPV196 conserved hypothetical protein 62.963 100 189 190 190  
SWPV1-173 SWPV2-185 CNPV197 CNPV197 N1R/p28-like protein 61.679 97.818 279 275 275  
SWPV1-174 SWPV2-186 CNPV198 CNPV198 C-type lectin-like protein 55.844 99.359 159 156 156  
SWPV1-175 SWPV2-187 CNPV199 CNPV199 deoxycytidine kinase-like protein 79.111 100 222 225 225  
SWPV1-176 SWPV2-188 CNPV200 CNPV200 Rep-like protein 72.903 97.59 152 166 166  
SWPV1-177 SWPV2-189 CNPV201 CNPV201 conserved hypothetical protein 60 97.661 197 167 192  
SWPV1-178 SWPV2-190 CNPV202 CNPV202 N1R/p28-like protein 69.203 99.638 275 276 276  
SWPV1-179 SWPV2-191 CNPV203 CNPV203 N1R/p28-like protein 64.935 99.738 380 382 382  
SWPV1-180 SWPV2-192 CNPV204 CNPV204 conserved hypothetical protein 53.226 100 53 61 61  
SWPV1-181 SWPV2-193 CNPV205 CNPV205 N1R/p28-like protein 71.885 99.371 317 318 318  
SWPV1-182 SWPV2-194 CNPV206 CNPV206 putative photolyase 84.989 99.364 464 472 472  
SWPV1-183    CNPV081 Ig-like domain protein 53.988   332   333  
SWPV1-184 SWPV2-195 CNPV207 CNPV207 N1R/p28-like protein 64.535 98.235 193 173 183  
SWPV1-185 SWPV2-196 CNPV208 CNPV208 conserved hypothetical protein 52.239 97.5 172 200 200  
SWPV1-186 SWPV2-197 CNPV209 CNPV209 N1R/p28-like protein 65.686 100 311 310 310  
SWPV1-187 SWPV2-198 CNPV210 CNPV210 N1R/p28-like protein 74.419 99.237 130 131 131  
SWPV1-188 SWPV2-199 CNPV211 CNPV211 conserved hypothetical protein 49.02 98.148 54 54 54  
SWPV1-189 SWPV2-200 CNPV212 CNPV212 N1R/p28-like protein 76.136 98.295 175 176 176  
SWPV1-190    no significant BLAST hits    70    SWPV1: Possible Unique ORF
SWPV1-191 SWPV2-201 CNPV213 CNPV213 deoxycytidine kinase-like protein 58.768 99.539 216 216 217  
  SWPV2-202 CNPV214 CNPV214 vaccinia C4L/C10L-like protein   99.438   356 356  
SWPV1-192    CNPV012 conserved hypothetical protein 37.41   165   189  
SWPV1-193    CNPV223 ankyrin repeat protein 31.579   674   847  
SWPV1-194 SWPV2-203 CNPV215 CNPV215 CC chemokine-like protein 49.751 96.078 202 204 204  
  SWPV2-204 CNPV216 CNPV216 conserved hypothetical protein   98.762   401 404  
  SWPV2-205 CNPV217 CNPV217 N1R/p28-like protein   95.152   330 330  
SWPV1-195    CNPV223 ankyrin repeat protein 38.474   729   847 SWPV1: N-terminus fragment
SWPV1-196 SWPV2-206 CNPV218 CNPV218 N1R/p28-like protein 66.667 99.522 318 223 437 SWPV2: N-terminus fragment
SWPV1-197    CNPV228 N1R/p28-like protein 53   161   371 SWPV1: N-terminus fragment
SWPV1-198    CNPV160 N1R/p28-like protein 79.293   367   396 SWPV1: Fragment/CNPV-220/221 Fusion
SWPV1-199    CNPV160 N1R/p28-like protein 66.582   360   396 SWPV1: Paralog to SWPV1-198?
SWPV1-200    CNPV161 TGF-beta-like protein 36.882   256   358  
SWPV1-201    CNPV162 TGF-beta-like protein 50   141   149  
SWPV1-202    no significant BLAST hits    98    SWPV1: Possible Unique ORF
  SWPV2-207 CNPV219 CNPV219 N1R/p28-like protein   99.713   349 349  
  SWPV2-208 CNPV220 CNPV220 N1R/p28-like protein   80.263   85 178 SWPV2: N-terminus fragment
  SWPV2-209 CNPV221 CNPV221 N1R/p28-like protein   94.231   213 281 SWPV2: N-terminus fragment
  SWPV2-210 CNPV222 CNPV222 N1R/p28-like protein   99.649   285 285  
  SWPV2-211 CNPV223 CNPV223 ankyrin repeat protein   98.819   847 847  
SWPV1-203 SWPV2-212 CNPV224 CNPV224 hypothetical protein 50.382 100 126 239 239  
  SWPV2-213 CNPV225 CNPV225 N1R/p28-like protein   74.038   94 159 SWPV2: N-terminus fragment
  SWPV2-214 CNPV226 CNPV226 N1R/p28-like protein   96.825   126 134  
   CNPV227 CNPV227 N1R/p28-like protein      359  
   CNPV228 CNPV228 N1R/p28-like protein      371  
SWPV1-204 SWPV2-215 CNPV229 CNPV229 ankyrin repeat protein 44.498 97.926 423 434 434  
  SWPV2-216 CNPV230 CNPV230 hypothetical protein   98.462   65 65  
SWPV1-205 SWPV2-217 CNPV231 CNPV231 MyD116-like domain protein 72.222 98.101 100 158 158 SWPV1: large in-frame deletions
SWPV1-206 SWPV2-218 CNPV232 CNPV232 CC chemokine-like protein 59.024 93.137 205 204 204  
SWPV1-207 SWPV2-219 CNPV233 CNPV233 ankyrin repeat protein 56.936 99.788 476 471 471  
  SWPV2-220 CNPV234 CNPV234 ankyrin repeat protein   100   508 508 SWPV2: High SNP Density
SWPV1-208    PEPV008 vaccinia C4L/C10L-like protein 55   420   411  
  SWPV2-221 CNPV235 CNPV235 conserved hypothetical protein   88.426   432 432  
SWPV1-209 SWPV2-222 CNPV236 CNPV236 ribonucleotide reductase small subunit 83.282 95.666 324 323 323  
  SWPV2-223 CNPV237 CNPV237 ankyrin repeat protein   97.732   441 441  
SWPV1-210    CNPV234 ankyrin repeat protein 30.545   559   508  
SWPV1-211 SWPV2-224 CNPV238 CNPV238 late transcription factor VLTF-3 95.111 100 225 225 225  
SWPV1-212 SWPV2-225 CNPV239 CNPV239 virion redox protein 80.282 100 72 75 75  
SWPV1-213 SWPV2-226 CNPV240 CNPV240 virion core protein P4b 88.788 99.848 660 659 659  
SWPV1-214 SWPV2-227 CNPV241 CNPV241 immunodominant virion protein 47.368 99.07 242 215 215  
SWPV1-215 SWPV2-228 CNPV242 CNPV242 RNA polymerase subunit RPO19 88.166 98.817 169 169 169  
SWPV1-216 SWPV2-229 CNPV243 CNPV243 conserved hypothetical protein 81.501 98.928 373 373 373  
SWPV1-217 SWPV2-230 CNPV244 CNPV244 early transcription factor large subunit VETFL 95.91 100 709 709 709  
SWPV1-218 SWPV2-231 CNPV245 CNPV245 intermediate transcription factor VITF-3 90.667 99.667 300 300 300  
SWPV1-219 SWPV2-232 CNPV246 CNPV246 putative IMV membrane protein 80 98.667 76 75 75  
SWPV1-220 SWPV2-233 CNPV247 CNPV247 virion core protein P4a 81.494 99.664 897 893 893  
SWPV1-221 SWPV2-234 CNPV248 CNPV248 conserved hypothetical protein 78.723 100 281 279 279  
SWPV1-222 SWPV2-235 CNPV249 CNPV249 virion protein 74.269 99.405 167 168 168  
SWPV1-223 SWPV2-236 CNPV250 CNPV250 conserved hypothetical protein 36.082 94.595 73 56 99 SWPV2: N-terminus fragment
SWPV1-224 SWPV2-237 CNPV251 CNPV251 putative IMV membrane protein 69.565 100 69 69 69  
SWPV1-225 SWPV2-238 CNPV252 CNPV252 putative IMV membrane protein 68.478 98.913 92 92 92  
SWPV1-226 SWPV2-239 CNPV253 CNPV253 putative IMV membrane virulence factor 73.585 98.113 53 53 53  
SWPV1-227 SWPV2-240 CNPV254 CNPV254 conserved hypothetical protein 75 98.958 96 96 96  
SWPV1-228 SWPV2-241 CNPV255 CNPV255 predicted myristylated protein 84.282 99.728 368 368 368  
SWPV1-229 SWPV2-242 CNPV256 CNPV256 putative phosphorylated IMV membrane protein 81.006 100 188 192 192  
SWPV1-230 SWPV2-243 CNPV257 CNPV257 DNA helicase, transcriptional elongation 87.229 99.784 462 462 462  
SWPV1-231 SWPV2-244 CNPV258 CNPV258 conserved hypothetical protein 77.647 100 86 89 89  
SWPV1-232 SWPV2-245 CNPV259 CNPV259 DNA polymerase processivity factor 81.86 100 432 112 434  
SWPV1-233 SWPV2-246 CNPV260 CNPV260 conserved hypothetical protein 91.071 99.77 112 434 112  
SWPV1-234 SWPV2-247 CNPV261 CNPV261 Holliday junction resolvase protein 80.405 100 151 152 152  
SWPV1-235 SWPV2-248 CNPV262 CNPV262 intermediate transcription factor VITF-3 86.126 100 383 383 383  
SWPV1-236 SWPV2-249 CNPV263 CNPV263 RNA polymerase subunit RPO132 94.301 100 1158 1157 1157  
SWPV1-237 SWPV2-250 CNPV264 CNPV264 A type inclusion-like protein 81.015 99.502 602 601 603  
SWPV1-238 SWPV2-251 CNPV265 CNPV265 A type inclusion-like/fusion protein 67.015 99.789 471 475 475  
SWPV1-239 SWPV2-252 CNPV266 CNPV266 conserved hypothetical protein 89.286 99.286 140 140 140  
SWPV1-240 SWPV2-253 CNPV267 CNPV267 RNA polymerase subunit RPO35 77.558 99.016 303 305 305  
SWPV1-241 SWPV2-254 CNPV268 CNPV268 conserved hypothetical protein 73.529 100 72 75 75  
SWPV1-242 SWPV2-255 CNPV269 CNPV269 conserved hypothetical protein 70.796 100 113 113 113  
SWPV1-243 SWPV2-256 CNPV270 CNPV270 conserved hypothetical protein 70.588 100 119 120 120  
SWPV1-244 SWPV2-257 CNPV271 CNPV271 DNA packaging protein 89.963 99.648 272 284 284  
SWPV1-245 SWPV2-258 CNPV272 CNPV272 C-type lectin-like EEV protein 76.136 99.448 182 181 181  
SWPV1-246    CNPV012 conserved hypothetical protein 30.147   172   189  
SWPV1-247 SWPV2-259 CNPV273 CNPV273 conserved hypothetical protein 62.816 99.635 276 274 274  
SWPV1-248 SWPV2-260 CNPV274 CNPV274 putative tyrosine protein kinase 63.197 99.628 286 269 269  
SWPV1-249 SWPV2-261 CNPV275 CNPV275 putative serpin 72.271 99.408 340 338 338  
SWPV1-250 SWPV2-262 CNPV276 CNPV276 conserved hypothetical protein 56.667 100 227 252 252  
SWPV1-251 SWPV2-263 CNPV277 CNPV277 G protein-coupled receptor-like protein 90 99.677 310 310 310  
SWPV1-252 SWPV2-264 CNPV278 CNPV278 conserved hypothetical protein 89.691 98.958 97 96 96  
SWPV1-253 SWPV2-265 CNPV279 CNPV279 beta-NGF-like protein 63.415 100 167 169 169  
SWPV1-254 SWPV2-266 CNPV280 CNPV280 HT motif protein 67.692 99.231 134 130 130  
SWPV1-255 SWPV2-267 CNPV281 CNPV281 conserved hypothetical protein 71.728 99.533 192 214 214  
SWPV1-256 SWPV2-268 CNPV282 CNPV282 HT motif protein 71.552 100 118 120 120  
SWPV1-257 SWPV2-269 CNPV283 CNPV283 CC chemokine-like protein 63.208 100 110 111 111  
SWPV1-258 SWPV2-270 CNPV284 CNPV284 putative interleukin binding protein 37.405 90.769 192 193 195  
SWPV1-259 SWPV2-271 CNPV285 CNPV285 EGF-like protein 62.992 99.206 123 126 126  
SWPV1-260 SWPV2-272 CNPV286 CNPV286 putative serine/threonine protein kinase 76.744 99.672 303 305 305  
SWPV1-261 SWPV2-273 CNPV287 CNPV287 conserved hypothetical protein 73.248 98.758 165 160 161  
SWPV1-262 SWPV2-274 CNPV288 CNPV288 C-type lectin-like protein 52.414 88.435 163 147 147  
SWPV1-263 SWPV2-275 CNPV289 CNPV289 putative interleukin binding protein 58.993 99.281 132 139 139  
SWPV1-264 SWPV2-276 CNPV290 CNPV290 conserved hypothetical protein 84 83.784 75 75 75  
SWPV1-265 SWPV2-277 CNPV291 CNPV291 ankyrin repeat protein 48.067 98.99 613 594 594  
SWPV1-266 SWPV2-278 CNPV292 CNPV292 hypothetical protein 37.209 100 101 74 74  
SWPV1-267 SWPV2-279 CNPV293 CNPV293 ankyrin repeat protein 55.634 99.648 305 284 284  
SWPV1-268 SWPV2-280 CNPV294 CNPV294 ankyrin repeat protein 68.447 99.07 424 430 430  
SWPV1-269    PIPV223 host range protein 51   138   143  
SWPV1-270    FWPV217 hypothetical protein 50   330   328  
SWPV1-271 SWPV2-281 CNPV295 CNPV295 ankyrin repeat protein 57.736 100 264 396 396  
SWPV1-272 SWPV2-282 CNPV296 CNPV296 ankyrin repeat protein 67.195 99.127 438 458 458  
SWPV1-273 SWPV2-283 CNPV297 CNPV297 ankyrin repeat protein 54.972 99.457 717 737 737  
SWPV1-274 SWPV2-284 CNPV298 CNPV298 ankyrin repeat protein 64.591 99.825 573 571 571  
SWPV1-275 SWPV2-285 CNPV299 CNPV299 putative serine/threonine protein kinase 67.893 99.333 303 300 300  
SWPV1-276 SWPV2-286 CNPV300 CNPV300 ankyrin repeat protein 75.82 98.77 253 244 244  
SWPV1-277    CNPV219 N1R/p28-like protein 28.467   142   349  
SWPV1-278    CNPV228 N1R/p28-like protein 43.038   87   371  
SWPV1-279    TKPV163 ankyrin repeat protein 40   432   434  
SWPV1-280 SWPV2-287 CNPV301 CNPV301 ankyrin repeat protein 59.546 99.241 510 527 527  
SWPV1-281 SWPV2-288 CNPV302 CNPV302 conserved hypothetical protein 45.026 100 175 193 193  
SWPV1-282 SWPV2-289 CNPV303 CNPV303 ankyrin repeat protein 68.938 99.4 499 500 500  
SWPV1-283 SWPV2-290 CNPV304 CNPV304 ankyrin repeat protein 62.105 99.785 476 466 466  
SWPV1-284 SWPV2-291 CNPV305 CNPV305 N1R/p28-like protein 54.545 100 261 262 262  
SWPV1-285 SWPV2-292 CNPV306 CNPV306 hypothetical protein 30.769 98.611 73 72 72  
SWPV1-286 SWPV2-293 CNPV307 CNPV307 C-type lectin-like protein 55.828 100 165 154 154  
SWPV1-287 SWPV2-294 CNPV308 CNPV308 ankyrin repeat protein 58.757 99.44 359 357 357  
SWPV1-288 SWPV2-295 CNPV309 CNPV309 ankyrin repeat protein 69.388 100 195 196 196  
SWPV1-289 SWPV2-296 CNPV310 CNPV310 ankyrin repeat protein 47.359 99.255 540 537 537  
SWPV1-290 SWPV2-297 CNPV311 CNPV311 EFc-like protein 54.4 99.194 125 124 124  
SWPV1-291 SWPV2-298 CNPV312 CNPV312 conserved hypothetical protein 53.704 98.795 168 166 166  
SWPV1-292 SWPV2-299 CNPV313 CNPV313 Ig-like domain protein 69.43 98.165 213 218 218  
SWPV1-293 SWPV2-300 CNPV314 CNPV314 ankyrin repeat protein 71.552 99.829 580 629 584  
SWPV1-294    CNPV011 ankyrin repeat protein 32   513   586  
SWPV1-295 SWPV2-301 CNPV315 CNPV315 G protein-coupled receptor-like protein 59.17 99.365 315 315 315  
SWPV1-296    CNPV014 Ig-like domain protein 59.624   230   490  
SWPV1-297    CNPV014 Ig-like domain protein 59.641   240   490  
SWPV1-298    CNPV015 ankyrin repeat protein 45.455   74   528  
SWPV1-299    CNPV150 ankyrin repeat protein 36.364   84   351  
SWPV1-300 SWPV2-302 CNPV316 CNPV316 ankyrin repeat protein 35.294 99.632 162 544 544  
  SWPV2-303 CNPV317 CNPV317 hypothetical protein   100   55 55  
  SWPV2-304 CNPV318 CNPV318 ankyrin repeat protein   98.054   514 514  
  SWPV2-305 CNPV319 CNPV319 ankyrin repeat protein   97.638   637 739 SWPV2: C-terminus fragment, not likely translated
SWPV1-301    PIPV253 EFc-like protein 69   124   124  
SWPV1-302    CNPV015 ankyrin repeat protein 45.276   520   528  
SWPV1-303    CNPV223 ankyrin repeat protein 40   480   847  
SWPV1-304 SWPV2-306 CNPV320 CNPV320 Ig-like domain protein 76.858 99.787 468 469 469  
  SWPV2-307 CNPV321 CNPV321 EFc-like protein   99.194   124 124  
  SWPV2-308 CNPV322 CNPV322 ankyrin repeat protein   98.408   689 690  
SWPV1-305    CNPV035 C-type lectin-like protein 35.556   138   134  
SWPV1-306    CNPV008 C-type lectin-like protein 50   174   169  
SWPV1-307 SWPV2-309 CNPV323 CNPV323 conserved hypothetical protein 75.61 93.651 84 186 182  
SWPV1-308 SWPV2-310 CNPV324 CNPV324 conserved hypothetical protein 87.387 99.55 220 222 222  
SWPV1-309   CNPV325 CNPV325 ankyrin repeat protein 56.458   468   514  
SWPV1-310 SWPV2-311 CNPV326 CNPV326 C-type lectin-like protein 32.044 85.99 181 208 204  
  SWPV2-312 CNPV327 CNPV327 hypothetical protein   92.941   171 171  
   CNPV328 CNPV328 hypothetical protein      72  
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BMC Genomics

ISSN: 1471-2164

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