Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.)

Sarker, Subir; Das, Shubhagata; Lavers, Jennifer L.; Hutton, Ian; Helbig, Karla; Imbery, Jacob; Upton, Chris; Raidal, Shane R.

doi:10.1186/s12864-017-3680-z

BMC Genomics

Table 1 Shearwaterpox virus (SWPV) genome annotations and comparative analysis of ORFs relative to CNPV genomes

From: Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.)

SWPV1 synteny	SWPV2 synteny	CNPV synteny	CNPV BLAST hits	SWPV1 % identity	SWPV2 % identity	SWPV1 AA size	SWPV2 AA size	Reference AA size	notes
		CNPV001	CNPV001 hypothetical protein					72
	SWPV2-001	CNPV002	CNPV002 hypothetical protein		92.941		171	171
SWPV1-001	SWPV2-002	CNPV003	CNPV003 C-type lectin-like protein	32.044	85.99	181	208	204
SWPV1-002		CNPV004	CNPV004 ankyrin repeat protein	56.458		468		514
SWPV1-003	SWPV2-003	CNPV005	CNPV005 conserved hypothetical protein	87.387	99.55	220	222	222
	SWPV2-004	CNPV006	CNPV006 hypothetical protein		88.71		134	182	SWPV2: C-terminus fragment, not likely translated
		CNPV007	CNPV007 ankyrin repeat protein					674
SWPV1-004	SWPV2-005	CNPV008	CNPV008 C-type lectin-like protein	50	98.225	174	169	169
	SWPV2-006	CNPV009	CNPV009 ankyrin repeat protein		99.564		688	688
		CNPV010	CNPV010 ankyrin repeat protein					734
	SWPV2-007	CNPV011	CNPV011 ankyrin repeat protein		99.147		586	586
	SWPV2-008	CNPV012	CNPV012 hypothetical protein		100		189	189
	SWPV2-009	CNPV013	CNPV013 hypothetical protein		98.81		168	168
	SWPV2-010	CNPV014	CNPV014 immunoglobulin-like domain protein		99.184		490	490
	SWPV2-011	CNPV015	CNPV015 ankyrin repeat protein		97.538		528	528
SWPV1-005			CNPV035 C-type lectin-like protein	35.556		138		134
SWPV1-006			CNPV318 ankyrin repeat protein	58.932		487		514
SWPV1-007	SWPV2-012	CNPV016	CNPV016 C-type lectin-like protein	52.128	98.81	117	168	168
SWPV1-008	SWPV2-013	CNPV017	CNPV017 ankyrin repeat protein	64.471	97.912	425	479	486
SWPV1-009			CNPV295 ankyrin repeat protein	56.41		277		396
	SWPV2-014	CNPV018	CNPV018 IL-10-like protein		90.805		190	191
	SWPV2-015	CNPV019	CNPV019 ankyrin repeat protein		99.083		436	436
SWPV1-010	SWPV2-016	CNPV020	CNPV020 ankyrin repeat protein	56.311	99.761	412	419	419
SWPV1-011			CNPV320 Ig-like domain protein	31.656		483		469
SWPV1-012	SWPV2-017	CNPV021	CNPV021 ankyrin repeat protein	62.313	99.626	528	535	535
SWPV1-013	SWPV2-018	CNPV022	CNPV022 putative serpin	65.642	98.324	356	358	358
SWPV1-014			PEPV260 ankyrin repeat protein	53.158		190		192
SWPV1-015			CNPV011 ankyrin repeat protein	34		530		586
	SWPV2-019	CNPV023	CNPV023 vaccinia C4L/C10L-like protein		98.595		424	427
	SWPV2-020	CNPV024	CNPV024 hypothetical protein		96.629		178	178
SWPV1-016	SWPV2-021	CNPV025	CNPV025 alpha-SNAP-like protein	57.491	98.667	304	300	300
SWPV1-017	SWPV2-022	CNPV026	CNPV026 ankyrin repeat protein	54.271	98.953	397	382	382
SWPV1-018	SWPV2-023	CNPV027	CNPV027 ankyrin repeat protein	59.375	98.722	646	626	626
SWPV1-019	SWPV2-024	CNPV028	CNPV028 ankyrin repeat protein	57.618	99.164	408	365	362
SWPV1-020	SWPV2-025	CNPV029	CNPV029 C-type lectin-like protein	50.35	99.296	142	142	142
SWPV1-021	SWPV2-026	CNPV030	CNPV030 ankyrin repeat protein	63.72	98.529	345	340	340
SWPV1-022	SWPV2-027	CNPV031	CNPV031 hypothetical protein	60.331	97.479	120	119	119
SWPV1-023			CNPV013 conserved hypothetical protein	44.048		168		168
SWPV1-024	SWPV2-028	CNPV032	CNPV032 Ig-like domain putative IFN-gamma binding protein	51.837	92.149	242	242	242
SWPV1-025	SWPV2-029	CNPV033	CNPV033 Ig-like domain protein	48.095	93.496	238	246	246
	SWPV2-030	CNPV034	CNPV034 ankyrin repeat protein		99.848		659	659
	SWPV2-031	CNPV035	CNPV035 C-type lectin-like protein		94.776		133	134
SWPV1-026	SWPV2-032	CNPV036	CNPV036 conserved hypothetical protein	48.235	98.947	88	95	95
SWPV1-027	SWPV2-033	CNPV037	CNPV037 conserved hypothetical protein	63.068	99.441	178	179	179
SWPV1-028	SWPV2-034	CNPV038	CNPV038 vaccinia C4L/C10L-like protein	54.523	99.516	411	413	413
SWPV1-029	SWPV2-035	CNPV039	CNPV039 G protein-coupled receptor-like protein	67.284	97.859	323	327	327
SWPV1-030	SWPV2-036	CNPV040	CNPV040 ankyrin repeat protein	57.36	93.401	589	591	591	SWPV2: High SNP Density
SWPV1-031	SWPV2-037	CNPV041	CNPV041 ankyrin repeat protein	66.284	98.605	432	430	430
SWPV1-032	SWPV2-038	CNPV042	CNPV042 ankyrin repeat protein	72.712	99.339	608	605	605
SWPV1-033	SWPV2-039	CNPV043	CNPV043 conserved hypothetical protein	74.627	99.005	202	201	201
SWPV1-034	SWPV2-040	CNPV044	CNPV044 ankyrin repeat protein	67.316	99.583	470	480	480
SWPV1-035	SWPV2-041	CNPV045	CNPV045 G protein-coupled receptor-like protein	65.231	100	331	332	332
SWPV1-036	SWPV2-042	CNPV046	CNPV046 ankyrin repeat protein	68.08	98.667	452	450	450
SWPV1-037	SWPV2-043	CNPV047	CNPV047 conserved hypothetical protein	65.6	99.194	125	124	124
SWPV1-038	SWPV2-044	CNPV048	CNPV048 alkaline phosphodiesterase-like protein	68.238	98.502	804	801	801
SWPV1-039	SWPV2-045	CNPV049	CNPV049 hypothetical protein	72.667	100	148	150	150
SWPV1-040	SWPV2-046	CNPV050	CNPV050 ankyrin repeat protein	67.422	98.864	352	352	352
SWPV1-041	SWPV2-047	CNPV051	CNPV051 DNase II-like protein	63.683	96.75	398	408	401
SWPV1-042	SWPV2-048	CNPV052	CNPV052 C-type lectin-like protein	50	100	182	171	171
SWPV1-043			FWPV ankyrin repeat protein	45		329		406
SWPV1-044	SWPV2-049	CNPV053	CNPV053 conserved hypothetical protein	68.148	100	135	146	146
SWPV1-045	SWPV2-050	CNPV054	CNPV054 conserved hypothetical protein	62.59	99.286	141	140	140
SWPV1-046	SWPV2-051	CNPV055	CNPV055 conserved hypothetical protein	74.534	100	162	163	163
SWPV1-047	SWPV2-052	CNPV056	CNPV056 dUTPase	80.986	98.621	155	145	145
SWPV1-048	SWPV2-053	CNPV057	CNPV057 putative serpin	63.107	99.02	301	306	306
SWPV1-049	SWPV2-054	CNPV058	CNPV058 bcl-2 like protein	51.744	98.857	174	180	175
SWPV1-050	SWPV2-055	CNPV059	CNPV059 putative serpin	71.302	99.704	338	338	338
SWPV1-051	SWPV2-056	CNPV060	CNPV060 conserved hypothetical protein	46.939	95.098	236	206	316	SWPV2: Large internal deletion, Translated but not likely functional
SWPV1-052	SWPV2-057	CNPV061	CNPV061 DNA ligase	80.995	98.761	567	565	565
SWPV1-053	SWPV2-058	CNPV062	CNPV062 putative serpin	70.94	100	349	350	350
SWPV1-054	SWPV2-059	CNPV063	CNPV063 hydroxysteroid dehydrogenase-like protein	71.348	99.441	359	358	358
SWPV1-055	SWPV2-060	CNPV064	CNPV064 TGF-beta-like protein	56.897	98.587	272	283	282
SWPV1-056	SWPV2-061	CNPV065	CNPV065 semaphorin-like protein	69.735	99.485	573	583	583
SWPV1-057	SWPV2-062	CNPV066	CNPV066 hypothetical protein	37.349	98.519	139	399	405	SWPV1: Low BLAST hits, possible unique ORF
	SWPV2-063	CNPV067	CNPV067 hypothetical protein		100		57	57
SWPV1-058			no significant BLAST hits					239	SWPV1: Possible Unique ORF
SWPV1-059	SWPV2-064	CNPV068	CNPV068 GNS1/SUR4-like protein	84.825	99.611	257	257	257
SWPV1-060	SWPV2-065	CNPV069	CNPV069 late transcription factor VLTF-2	87.5	100	154	155	155
SWPV1-061	SWPV2-066	CNPV070	CNPV070 putative rifampicin resistance protein, IMV assembly	88.065	100	553	551	551
SWPV1-062	SWPV2-067	CNPV071	CNPV071 mRNA capping enzyme small subunit	89.273	100	289	289	289
	SWPV2-068	CNPV072	CNPV072 CC chemokine-like protein		96.262		132	312	SWPV2: N-terminus fragment
SWPV1-063	SWPV2-069	CNPV073	CNPV073 hypothetical protein	45.263	100	110	109	109
SWPV1-064	SWPV2-070	CNPV074	CNPV074 NPH-I, transcription termination factor	92.756	99.685	635	635	635
SWPV1-065	SWPV2-071	CNPV075	CNPV075 mutT motif putative gene expression regulator	79.295	100	226	228	230
SWPV1-066	SWPV2-072	CNPV076	CNPV076 mutT motif	84.549	99.569	233	232	232
		CNPV077	CNPV077 hypothetical protein					78
SWPV1-067			CNPV011 ankyrin repeat protein	29.806		435		586
SWPV1-068	SWPV2-073	CNPV078	CNPV078 RNA polymerase subunit RPO18	82.39	100	161	160	160
	SWPV2-074	CNPV079	CNPV079 Ig-like domain protein		94.161		274	272
SWPV1-069	SWPV2-075	CNPV080	CNPV080 early transcription factor small subunit VETFS	96.682	100	633	633	633
	SWPV2-076	CNPV081	CNPV081 Ig-like domain protein		97.006		334	333
SWPV1-070	SWPV2-077	CNPV082	CNPV082 NTPase, DNA replication	88.818	99.748	790	794	794
SWPV1-071	SWPV2-078	CNPV083	CNPV083 CC chemokine-like protein	60.352	91.855	223	221	221
SWPV1-072			CNPV215 CC chemokine-like protein	30.994		195		204
SWPV1-073	SWPV2-079	CNPV084	CNPV084 uracil DNA glycosylase	86.364	97.706	220	218	218
SWPV1-074	SWPV2-080	CNPV085	CNPV085 putative RNA phosphatase	67.895	74.312	245	303	403	SWPV2: High SNP Density
SWPV1-075			CNPV216 conserved hypothetical protein	39.225		398		404
SWPV1-076	SWPV2-081	CNPV086	CNPV086 TNFR-like protein	67.327	71.569	103	112	117
	SWPV2-082	CNPV087	CNPV087 putative glutathione peroxidase		98.473		131	198	SWPV2: C-terminus fragment, not likely translated
SWPV1-077			CNPV227 N1R/p28-like protein	74.638		256		359
SWPV1-078	SWPV2-083	CNPV088	CNPV088 conserved hypothetical protein	55.769	97	104	100	100
SWPV1-079	SWPV2-084	CNPV089	CNPV089 conserved hypothetical protein	64.935	100	164	159	159
SWPV1-080	SWPV2-085	CNPV090	CNPV090 conserved hypothetical protein	62.393	100	124	127	127
SWPV1-081	SWPV2-086	CNPV091	CNPV091 HT motif protein	64.634	100	77	83	83
SWPV1-082	SWPV2-087	CNPV092	CNPV092 conserved hypothetical protein	64.901	97.945	140	146	146
SWPV1-083	SWPV2-088	CNPV093	CNPV093 virion protein	60.37	99.625	270	267	267
SWPV1-084	SWPV2-089	CNPV094	CNPV094 T10-like protein	75	98.909	282	275	275
SWPV1-085	SWPV2-090	CNPV095	CNPV095 conserved hypothetical protein	71.111	100	47	45	45
SWPV1-086	SWPV2-091	CNPV096	CNPV096 ubiquitin	100	100	77	85	85
SWPV1-087	SWPV2-092	CNPV097	CNPV097 conserved hypothetical protein	70.031	99.705	298	339	339
SWPV1-088	SWPV2-093	CNPV098	CNPV098 hypothetical protein	67.442	98.75	61	80	80
SWPV1-089	SWPV2-094	CNPV099	CNPV099 beta-NGF-like protein	62.162	97.949	186	195	195
SWPV1-090	SWPV2-095	CNPV100	CNPV100 putative interleukin binding protein	51.176	98.225	211	168	169
	SWPV2-096	CNPV101	CNPV101 hypothetical protein		98.824		85	85
SWPV1-091	SWPV2-097	CNPV102	CNPV102 conserved hypothetical protein	54.167	99.048	102	105	105
SWPV1-092	SWPV2-098	CNPV103	CNPV103 N1R/p28-like protein	62.304	98.947	188	190	190
SWPV1-093	SWPV2-099	CNPV104	CNPV104 putative glutaredoxin 2, virion morphogenesis	86.4	99.2	125	125	125
SWPV1-094	SWPV2-100	CNPV105	CNPV105 conserved hypothetical protein	77.35	98.718	234	234	234
SWPV1-095	SWPV2-101	CNPV106	CNPV106 putative elongation factor	76.829	98.039	103	102	102
	SWPV2-102	CNPV107	CNPV107 hypothetical protein		100		77	77
SWPV1-096			PEPV083 transforming growth factor B	64		444		336
SWPV1-097	SWPV2-103	CNPV108	CNPV108 putative metalloprotease, virion morphogenesis	85.489	100	633	632	632
SWPV1-098	SWPV2-104	CNPV109	CNPV109 NPH-II, RNA helicase	86.05	99.706	681	681	681
SWPV1-099	SWPV2-105	CNPV110	CNPV110 virion core proteinase	87.441	99.763	421	422	422
SWPV1-100	SWPV2-106	CNPV111	CNPV111 DNA-binding protein	80.612	99.488	391	391	391
SWPV1-101	SWPV2-107	CNPV112	CNPV112 putative IMV membrane protein	81.481	100	81	81	81
SWPV1-102	SWPV2-108	CNPV113	CNPV113 thymidine kinase	75.978	99.441	181	179	179
SWPV1-103	SWPV2-109	CNPV114	CNPV114 HT motif protein	69.62	100	79	82	82
SWPV1-104	SWPV2-110	CNPV115	CNPV115 DNA-binding phosphoprotein	71.429	82.353	282	289	289	SWPV2: High SNP density
SWPV1-105	SWPV2-111	CNPV116	CNPV116 unnamed protein product	73.913	98.551	66	69	69
SWPV1-106	SWPV2-112	CNPV117	CNPV117 DNA-binding virion protein	88.854	99.677	314	310	310
SWPV1-107	SWPV2-113	CNPV118	CNPV118 conserved hypothetical protein	75.762	99.387	656	652	653
SWPV1-108	SWPV2-114	CNPV119	CNPV119 virion core protein	83.969	100	131	131	131
SWPV1-109	SWPV2-115	CNPV120	CNPV120 putative IMV redox protein, virus assembly	80.851	100	94	93	93
SWPV1-110	SWPV2-116	CNPV121	CNPV121 DNA polymerase	89.17	99.899	988	988	988
SWPV1-111		CNPV122	CNPV122 putative membrane protein	83.088		273		274
SWPV1-112	SWPV2-117	CNPV123	CNPV123 conserved hypothetical protein	82.312	85.336	571	502	571	SWPV2: High SNP density
SWPV1-113	SWPV2-118	CNPV124	CNPV124 variola B22R-like protein	67	98.957	1906	1916	1918
SWPV1-114	SWPV2-119	CNPV125	CNPV125 variola B22R-like protein	71.669	99.66	1742	1767	1767
SWPV1-115	SWPV2-120	CNPV126	CNPV126 variola B22R-like protein	64.456	98.847	1902	1839	1951	SWPV2: N-terminus fragment
	SWPV2-121		CNPV126 variola B22R-like protein		96		153	1951	SWPV2: C-terminus fragment, not likely translated
SWPV1-116	SWPV2-122	CNPV127	CNPV127 RNA polymerase subunit RPO30	96.154	100	182	182	182
SWPV1-117	SWPV2-123	CNPV128	CNPV128 conserved hypothetical protein	77.072	98.752	742	721	721	SWPV2: High SNP Density
SWPV1-118	SWPV2-124	CNPV129	CNPV129 poly(A) polymerase large subunit PAPL	83.898	99.788	472	472	472
SWPV1-119	SWPV2-125	CNPV130	CNPV130 DNA-binding virion core protein	76.471	100	114	119	119
SWPV1-120	SWPV2-126	CNPV131	CNPV131 conserved hypothetical protein	64.115	99.517	212	207	207
SWPV1-121	SWPV2-127	CNPV132	CNPV132 conserved hypothetical protein	81.081	99.324	151	148	148
SWPV1-122	SWPV2-128	CNPV133	CNPV133 conserved hypothetical protein	73.737	100	90	99	99
SWPV1-123	SWPV2-129	CNPV134	CNPV134 variola B22R-like protein	65.517	99.001	1774	1801	1801
SWPV1-124	SWPV2-130	CNPV135	CNPV135 putative palmitylated EEV envelope lipase	89.418	99.735	378	378	378
SWPV1-125	SWPV2-131	CNPV136	CNPV136 putative EEV maturation protein	75.602	99.68	622	625	625
SWPV1-126	SWPV2-132	CNPV137	CNPV137 conserved hypothetical protein	62.26	98.925	467	462	465
SWPV1-127	SWPV2-133	CNPV138	CNPV138 putative serine/threonine protein kinase, virus assembly	83.632	100	445	444	444
SWPV1-128	SWPV2-134	CNPV139	CNPV139 conserved hypothetical protein	81.69	100	213	213	213
SWPV1-129	SWPV2-135	CNPV140	CNPV140 conserved hypothetical protein	78.788	100	65	66	66
SWPV1-130	SWPV2-136	CNPV141	CNPV141 HAL3-like domain protein	88.333	100	182	184	184
SWPV1-131			no significant BLAST hits	28		101		571	SWPV1: Possible Unique ORF
SWPV1-132	SWPV2-137	CNPV142	CNPV142 N1R/p28-like protein	48.266	98.442	314	321	321
SWPV1-133	SWPV2-138	CNPV143	CNPV143 ankyrin repeat protein	54.103	98.361	634	671	671
SWPV1-134	SWPV2-139	CNPV144	CNPV144 ankyrin repeat protein	59.011	99.281	562	556	556
SWPV1-135	SWPV2-140	CNPV145	CNPV145 conserved hypothetical protein	75.814	100	439	440	440
SWPV1-136	SWPV2-141	CNPV146	CNPV146 RNA polymerase subunit RPO7	88.525	100	66	62	62
SWPV1-137	SWPV2-142	CNPV147	CNPV147 conserved hypothetical protein	80.851	100	188	188	188
SWPV1-138	SWPV2-143	CNPV148	CNPV148 virion core protein	86.533	100	347	348	348
	SWPV2-144	CNPV149	CNPV149 putative thioredoxin binding protein		99.673		306	306
		CNPV150	CNPV150 ankyrin repeat protein					351
	SWPV2-145	CNPV151	CNPV151 ankyrin repeat protein		99.029		412	412
	SWPV2-146	CNPV152	CNPV152 hypothetical protein		98		149	187	SWPV2: C-terminus fragment, not likely translated
	SWPV2-147	CNPV153	CNPV153 Rep-like protein		99.359		312	312
SWPV1-139			CNPV159 N1R/p28-like protein	78.488		333		337
SWPV1-140			FWPV121 CC chemokine-like protein	46		93		121
SWPV1-141	SWPV2-148	CNPV154	CNPV154 variola B22R-like protein	90.067	98.286	1939	875	1928	SWPV2: N-terminus fragment/SWPV1: Low SNP Density
SWPV1-142	SWPV2-149	CNPV155	CNPV155 variola B22R-like protein	82.427	99.454	1810	1831	1830
	SWPV2-150	CNPV156	CNPV156 hypothetical protein		96.287		834	832
	SWPV2-151	CNPV157	CNPV157 TGF-beta-like protein		87.679		343	349
		CNPV158	CNPV158 TGF-beta-like protein					172
		CNPV159	CNPV159 N1R/p28-like protein					337
		CNPV160	CNPV160 N1R/p28-like protein					396
	SWPV2-152	CNPV161	CNPV161 TGF-beta-like protein		99.441		358	358
	SWPV2-153	CNPV162	CNPV162 TGF-beta-like protein		97.987		149	149
		CNPV163	CNPV163 hypothetical protein					92
		CNPV164	CNPV164 hypothetical protein					98
	SWPV2-154	CNPV165	CNPV165 N1R/p28-like protein		98.75		320	346	SWPV2: C-terminus fragment, not likely translated
SWPV1-143	SWPV2-155	CNPV166	CNPV166 Ig-like domain protein	96.812	95.652	345	345	345	SWPV1: Low SNP Density
SWPV1-144	SWPV2-156	CNPV167	CNPV167 Ig-like domain protein	94.767	88.372	172	168	171	SWPV1: Low SNP Density
	SWPV2-157	CNPV168	CNPV168 N1R/p28-like protein		96		350	358
SWPV1-145		CNPV169	CNPV169 N1R/p28-like protein	83.578		337		332	SWPV1: CNPV-168/169 Fusion
SWPV1-146	SWPV2-158	CNPV170	CNPV170 thymidylate kinase	100	100	121	212	212	SWPV1: N-terminus fragment
SWPV1-147	SWPV2-159	CNPV171	CNPV171 late transcription factor VLTF-1	96.923	100	260	260	260
SWPV1-148	SWPV2-160	CNPV172	CNPV172 putative myristylated protein	83.125	99.403	336	335	335
SWPV1-149	SWPV2-161	CNPV173	CNPV173 putative myristylated IMV envelope protein	91.358	98.354	243	243	243
SWPV1-150	SWPV2-162	CNPV174	CNPV174 conserved hypothetical protein	47.917	100	96	96	96
SWPV1-151	SWPV2-163	CNPV175	CNPV175 conserved hypothetical protein	84.158	100	303	303	303
SWPV1-152	SWPV2-164	CNPV176	CNPV176 DNA-binding virion core protein	87.747	100	253	252	252
SWPV1-153	SWPV2-165	CNPV177	CNPV177 conserved hypothetical protein	84.733	100	131	130	130
SWPV1-154	SWPV2-166	CNPV178	CNPV178 putative IMV membrane protein	85.135	100	148	148	148
SWPV1-155	SWPV2-167	CNPV179	CNPV179 poly(A) polymerase small subunit PAPS	88.667	100	300	302	302
SWPV1-156	SWPV2-168	CNPV180	CNPV180 RNA polymerase subunit RPO22	87.634	99.462	186	186	186
SWPV1-157	SWPV2-169	CNPV181	CNPV181 conserved hypothetical protein	82.353	100	136	136	136
SWPV1-158	SWPV2-170	CNPV182	CNPV182 RNA polymerase subunit RPO147	93.866	99.922	1288	1288	1288
SWPV1-159	SWPV2-171	CNPV183	CNPV183 putative protein-tyrosine phosphatase, virus assembly	85.542	100	166	166	166
SWPV1-160	SWPV2-172	CNPV184	CNPV184 conserved hypothetical protein	91.534	100	190	189	189
SWPV1-161	SWPV2-173	CNPV185	CNPV185 ankyrin repeat protein	32.632	96.341	337	328	328
SWPV1-162	SWPV2-174	CNPV186	CNPV186 IMV envelope protein	100	100	329	330	330
SWPV1-163	SWPV2-175	CNPV187	CNPV187 RNA polymerase associated protein RAP94	91.114	99.75	799	799	799
SWPV1-164	SWPV2-176	CNPV188	CNPV188 late transcription factor VLTF-4	70.115	92.941	170	170	170
SWPV1-165	SWPV2-177	CNPV189	CNPV189 DNA topoisomerase	88.608	99.684	316	316	316
SWPV1-166	SWPV2-178	CNPV190	CNPV190 conserved hypothetical protein	77.124	99.346	153	153	153
SWPV1-167	SWPV2-179	CNPV191	CNPV191 conserved hypothetical protein	70.874	99.029	103	103	103
SWPV1-168	SWPV2-180	CNPV192	CNPV192 mRNA capping enzyme large subunit	88.221	99.764	848	846	846
SWPV1-169	SWPV2-181	CNPV193	CNPV193 HT motif protein	72.619	100	104	106	106
SWPV1-170	SWPV2-182	CNPV194	CNPV194 virion protein	71.223	100	139	140	140
SWPV1-171	SWPV2-183	CNPV195	CNPV195 hypothetical protein	51.2	98.611	139	144	144
SWPV1-172	SWPV2-184	CNPV196	CNPV196 conserved hypothetical protein	62.963	100	189	190	190
SWPV1-173	SWPV2-185	CNPV197	CNPV197 N1R/p28-like protein	61.679	97.818	279	275	275
SWPV1-174	SWPV2-186	CNPV198	CNPV198 C-type lectin-like protein	55.844	99.359	159	156	156
SWPV1-175	SWPV2-187	CNPV199	CNPV199 deoxycytidine kinase-like protein	79.111	100	222	225	225
SWPV1-176	SWPV2-188	CNPV200	CNPV200 Rep-like protein	72.903	97.59	152	166	166
SWPV1-177	SWPV2-189	CNPV201	CNPV201 conserved hypothetical protein	60	97.661	197	167	192
SWPV1-178	SWPV2-190	CNPV202	CNPV202 N1R/p28-like protein	69.203	99.638	275	276	276
SWPV1-179	SWPV2-191	CNPV203	CNPV203 N1R/p28-like protein	64.935	99.738	380	382	382
SWPV1-180	SWPV2-192	CNPV204	CNPV204 conserved hypothetical protein	53.226	100	53	61	61
SWPV1-181	SWPV2-193	CNPV205	CNPV205 N1R/p28-like protein	71.885	99.371	317	318	318
SWPV1-182	SWPV2-194	CNPV206	CNPV206 putative photolyase	84.989	99.364	464	472	472
SWPV1-183			CNPV081 Ig-like domain protein	53.988		332		333
SWPV1-184	SWPV2-195	CNPV207	CNPV207 N1R/p28-like protein	64.535	98.235	193	173	183
SWPV1-185	SWPV2-196	CNPV208	CNPV208 conserved hypothetical protein	52.239	97.5	172	200	200
SWPV1-186	SWPV2-197	CNPV209	CNPV209 N1R/p28-like protein	65.686	100	311	310	310
SWPV1-187	SWPV2-198	CNPV210	CNPV210 N1R/p28-like protein	74.419	99.237	130	131	131
SWPV1-188	SWPV2-199	CNPV211	CNPV211 conserved hypothetical protein	49.02	98.148	54	54	54
SWPV1-189	SWPV2-200	CNPV212	CNPV212 N1R/p28-like protein	76.136	98.295	175	176	176
SWPV1-190			no significant BLAST hits			70			SWPV1: Possible Unique ORF
SWPV1-191	SWPV2-201	CNPV213	CNPV213 deoxycytidine kinase-like protein	58.768	99.539	216	216	217
	SWPV2-202	CNPV214	CNPV214 vaccinia C4L/C10L-like protein		99.438		356	356
SWPV1-192			CNPV012 conserved hypothetical protein	37.41		165		189
SWPV1-193			CNPV223 ankyrin repeat protein	31.579		674		847
SWPV1-194	SWPV2-203	CNPV215	CNPV215 CC chemokine-like protein	49.751	96.078	202	204	204
	SWPV2-204	CNPV216	CNPV216 conserved hypothetical protein		98.762		401	404
	SWPV2-205	CNPV217	CNPV217 N1R/p28-like protein		95.152		330	330
SWPV1-195			CNPV223 ankyrin repeat protein	38.474		729		847	SWPV1: N-terminus fragment
SWPV1-196	SWPV2-206	CNPV218	CNPV218 N1R/p28-like protein	66.667	99.522	318	223	437	SWPV2: N-terminus fragment
SWPV1-197			CNPV228 N1R/p28-like protein	53		161		371	SWPV1: N-terminus fragment
SWPV1-198			CNPV160 N1R/p28-like protein	79.293		367		396	SWPV1: Fragment/CNPV-220/221 Fusion
SWPV1-199			CNPV160 N1R/p28-like protein	66.582		360		396	SWPV1: Paralog to SWPV1-198?
SWPV1-200			CNPV161 TGF-beta-like protein	36.882		256		358
SWPV1-201			CNPV162 TGF-beta-like protein	50		141		149
SWPV1-202			no significant BLAST hits			98			SWPV1: Possible Unique ORF
	SWPV2-207	CNPV219	CNPV219 N1R/p28-like protein		99.713		349	349
	SWPV2-208	CNPV220	CNPV220 N1R/p28-like protein		80.263		85	178	SWPV2: N-terminus fragment
	SWPV2-209	CNPV221	CNPV221 N1R/p28-like protein		94.231		213	281	SWPV2: N-terminus fragment
	SWPV2-210	CNPV222	CNPV222 N1R/p28-like protein		99.649		285	285
	SWPV2-211	CNPV223	CNPV223 ankyrin repeat protein		98.819		847	847
SWPV1-203	SWPV2-212	CNPV224	CNPV224 hypothetical protein	50.382	100	126	239	239
	SWPV2-213	CNPV225	CNPV225 N1R/p28-like protein		74.038		94	159	SWPV2: N-terminus fragment
	SWPV2-214	CNPV226	CNPV226 N1R/p28-like protein		96.825		126	134
		CNPV227	CNPV227 N1R/p28-like protein					359
		CNPV228	CNPV228 N1R/p28-like protein					371
SWPV1-204	SWPV2-215	CNPV229	CNPV229 ankyrin repeat protein	44.498	97.926	423	434	434
	SWPV2-216	CNPV230	CNPV230 hypothetical protein		98.462		65	65
SWPV1-205	SWPV2-217	CNPV231	CNPV231 MyD116-like domain protein	72.222	98.101	100	158	158	SWPV1: large in-frame deletions
SWPV1-206	SWPV2-218	CNPV232	CNPV232 CC chemokine-like protein	59.024	93.137	205	204	204
SWPV1-207	SWPV2-219	CNPV233	CNPV233 ankyrin repeat protein	56.936	99.788	476	471	471
	SWPV2-220	CNPV234	CNPV234 ankyrin repeat protein		100		508	508	SWPV2: High SNP Density
SWPV1-208			PEPV008 vaccinia C4L/C10L-like protein	55		420		411
	SWPV2-221	CNPV235	CNPV235 conserved hypothetical protein		88.426		432	432
SWPV1-209	SWPV2-222	CNPV236	CNPV236 ribonucleotide reductase small subunit	83.282	95.666	324	323	323
	SWPV2-223	CNPV237	CNPV237 ankyrin repeat protein		97.732		441	441
SWPV1-210			CNPV234 ankyrin repeat protein	30.545		559		508
SWPV1-211	SWPV2-224	CNPV238	CNPV238 late transcription factor VLTF-3	95.111	100	225	225	225
SWPV1-212	SWPV2-225	CNPV239	CNPV239 virion redox protein	80.282	100	72	75	75
SWPV1-213	SWPV2-226	CNPV240	CNPV240 virion core protein P4b	88.788	99.848	660	659	659
SWPV1-214	SWPV2-227	CNPV241	CNPV241 immunodominant virion protein	47.368	99.07	242	215	215
SWPV1-215	SWPV2-228	CNPV242	CNPV242 RNA polymerase subunit RPO19	88.166	98.817	169	169	169
SWPV1-216	SWPV2-229	CNPV243	CNPV243 conserved hypothetical protein	81.501	98.928	373	373	373
SWPV1-217	SWPV2-230	CNPV244	CNPV244 early transcription factor large subunit VETFL	95.91	100	709	709	709
SWPV1-218	SWPV2-231	CNPV245	CNPV245 intermediate transcription factor VITF-3	90.667	99.667	300	300	300
SWPV1-219	SWPV2-232	CNPV246	CNPV246 putative IMV membrane protein	80	98.667	76	75	75
SWPV1-220	SWPV2-233	CNPV247	CNPV247 virion core protein P4a	81.494	99.664	897	893	893
SWPV1-221	SWPV2-234	CNPV248	CNPV248 conserved hypothetical protein	78.723	100	281	279	279
SWPV1-222	SWPV2-235	CNPV249	CNPV249 virion protein	74.269	99.405	167	168	168
SWPV1-223	SWPV2-236	CNPV250	CNPV250 conserved hypothetical protein	36.082	94.595	73	56	99	SWPV2: N-terminus fragment
SWPV1-224	SWPV2-237	CNPV251	CNPV251 putative IMV membrane protein	69.565	100	69	69	69
SWPV1-225	SWPV2-238	CNPV252	CNPV252 putative IMV membrane protein	68.478	98.913	92	92	92
SWPV1-226	SWPV2-239	CNPV253	CNPV253 putative IMV membrane virulence factor	73.585	98.113	53	53	53
SWPV1-227	SWPV2-240	CNPV254	CNPV254 conserved hypothetical protein	75	98.958	96	96	96
SWPV1-228	SWPV2-241	CNPV255	CNPV255 predicted myristylated protein	84.282	99.728	368	368	368
SWPV1-229	SWPV2-242	CNPV256	CNPV256 putative phosphorylated IMV membrane protein	81.006	100	188	192	192
SWPV1-230	SWPV2-243	CNPV257	CNPV257 DNA helicase, transcriptional elongation	87.229	99.784	462	462	462
SWPV1-231	SWPV2-244	CNPV258	CNPV258 conserved hypothetical protein	77.647	100	86	89	89
SWPV1-232	SWPV2-245	CNPV259	CNPV259 DNA polymerase processivity factor	81.86	100	432	112	434
SWPV1-233	SWPV2-246	CNPV260	CNPV260 conserved hypothetical protein	91.071	99.77	112	434	112
SWPV1-234	SWPV2-247	CNPV261	CNPV261 Holliday junction resolvase protein	80.405	100	151	152	152
SWPV1-235	SWPV2-248	CNPV262	CNPV262 intermediate transcription factor VITF-3	86.126	100	383	383	383
SWPV1-236	SWPV2-249	CNPV263	CNPV263 RNA polymerase subunit RPO132	94.301	100	1158	1157	1157
SWPV1-237	SWPV2-250	CNPV264	CNPV264 A type inclusion-like protein	81.015	99.502	602	601	603
SWPV1-238	SWPV2-251	CNPV265	CNPV265 A type inclusion-like/fusion protein	67.015	99.789	471	475	475
SWPV1-239	SWPV2-252	CNPV266	CNPV266 conserved hypothetical protein	89.286	99.286	140	140	140
SWPV1-240	SWPV2-253	CNPV267	CNPV267 RNA polymerase subunit RPO35	77.558	99.016	303	305	305
SWPV1-241	SWPV2-254	CNPV268	CNPV268 conserved hypothetical protein	73.529	100	72	75	75
SWPV1-242	SWPV2-255	CNPV269	CNPV269 conserved hypothetical protein	70.796	100	113	113	113
SWPV1-243	SWPV2-256	CNPV270	CNPV270 conserved hypothetical protein	70.588	100	119	120	120
SWPV1-244	SWPV2-257	CNPV271	CNPV271 DNA packaging protein	89.963	99.648	272	284	284
SWPV1-245	SWPV2-258	CNPV272	CNPV272 C-type lectin-like EEV protein	76.136	99.448	182	181	181
SWPV1-246			CNPV012 conserved hypothetical protein	30.147		172		189
SWPV1-247	SWPV2-259	CNPV273	CNPV273 conserved hypothetical protein	62.816	99.635	276	274	274
SWPV1-248	SWPV2-260	CNPV274	CNPV274 putative tyrosine protein kinase	63.197	99.628	286	269	269
SWPV1-249	SWPV2-261	CNPV275	CNPV275 putative serpin	72.271	99.408	340	338	338
SWPV1-250	SWPV2-262	CNPV276	CNPV276 conserved hypothetical protein	56.667	100	227	252	252
SWPV1-251	SWPV2-263	CNPV277	CNPV277 G protein-coupled receptor-like protein	90	99.677	310	310	310
SWPV1-252	SWPV2-264	CNPV278	CNPV278 conserved hypothetical protein	89.691	98.958	97	96	96
SWPV1-253	SWPV2-265	CNPV279	CNPV279 beta-NGF-like protein	63.415	100	167	169	169
SWPV1-254	SWPV2-266	CNPV280	CNPV280 HT motif protein	67.692	99.231	134	130	130
SWPV1-255	SWPV2-267	CNPV281	CNPV281 conserved hypothetical protein	71.728	99.533	192	214	214
SWPV1-256	SWPV2-268	CNPV282	CNPV282 HT motif protein	71.552	100	118	120	120
SWPV1-257	SWPV2-269	CNPV283	CNPV283 CC chemokine-like protein	63.208	100	110	111	111
SWPV1-258	SWPV2-270	CNPV284	CNPV284 putative interleukin binding protein	37.405	90.769	192	193	195
SWPV1-259	SWPV2-271	CNPV285	CNPV285 EGF-like protein	62.992	99.206	123	126	126
SWPV1-260	SWPV2-272	CNPV286	CNPV286 putative serine/threonine protein kinase	76.744	99.672	303	305	305
SWPV1-261	SWPV2-273	CNPV287	CNPV287 conserved hypothetical protein	73.248	98.758	165	160	161
SWPV1-262	SWPV2-274	CNPV288	CNPV288 C-type lectin-like protein	52.414	88.435	163	147	147
SWPV1-263	SWPV2-275	CNPV289	CNPV289 putative interleukin binding protein	58.993	99.281	132	139	139
SWPV1-264	SWPV2-276	CNPV290	CNPV290 conserved hypothetical protein	84	83.784	75	75	75
SWPV1-265	SWPV2-277	CNPV291	CNPV291 ankyrin repeat protein	48.067	98.99	613	594	594
SWPV1-266	SWPV2-278	CNPV292	CNPV292 hypothetical protein	37.209	100	101	74	74
SWPV1-267	SWPV2-279	CNPV293	CNPV293 ankyrin repeat protein	55.634	99.648	305	284	284
SWPV1-268	SWPV2-280	CNPV294	CNPV294 ankyrin repeat protein	68.447	99.07	424	430	430
SWPV1-269			PIPV223 host range protein	51		138		143
SWPV1-270			FWPV217 hypothetical protein	50		330		328
SWPV1-271	SWPV2-281	CNPV295	CNPV295 ankyrin repeat protein	57.736	100	264	396	396
SWPV1-272	SWPV2-282	CNPV296	CNPV296 ankyrin repeat protein	67.195	99.127	438	458	458
SWPV1-273	SWPV2-283	CNPV297	CNPV297 ankyrin repeat protein	54.972	99.457	717	737	737
SWPV1-274	SWPV2-284	CNPV298	CNPV298 ankyrin repeat protein	64.591	99.825	573	571	571
SWPV1-275	SWPV2-285	CNPV299	CNPV299 putative serine/threonine protein kinase	67.893	99.333	303	300	300
SWPV1-276	SWPV2-286	CNPV300	CNPV300 ankyrin repeat protein	75.82	98.77	253	244	244
SWPV1-277			CNPV219 N1R/p28-like protein	28.467		142		349
SWPV1-278			CNPV228 N1R/p28-like protein	43.038		87		371
SWPV1-279			TKPV163 ankyrin repeat protein	40		432		434
SWPV1-280	SWPV2-287	CNPV301	CNPV301 ankyrin repeat protein	59.546	99.241	510	527	527
SWPV1-281	SWPV2-288	CNPV302	CNPV302 conserved hypothetical protein	45.026	100	175	193	193
SWPV1-282	SWPV2-289	CNPV303	CNPV303 ankyrin repeat protein	68.938	99.4	499	500	500
SWPV1-283	SWPV2-290	CNPV304	CNPV304 ankyrin repeat protein	62.105	99.785	476	466	466
SWPV1-284	SWPV2-291	CNPV305	CNPV305 N1R/p28-like protein	54.545	100	261	262	262
SWPV1-285	SWPV2-292	CNPV306	CNPV306 hypothetical protein	30.769	98.611	73	72	72
SWPV1-286	SWPV2-293	CNPV307	CNPV307 C-type lectin-like protein	55.828	100	165	154	154
SWPV1-287	SWPV2-294	CNPV308	CNPV308 ankyrin repeat protein	58.757	99.44	359	357	357
SWPV1-288	SWPV2-295	CNPV309	CNPV309 ankyrin repeat protein	69.388	100	195	196	196
SWPV1-289	SWPV2-296	CNPV310	CNPV310 ankyrin repeat protein	47.359	99.255	540	537	537
SWPV1-290	SWPV2-297	CNPV311	CNPV311 EFc-like protein	54.4	99.194	125	124	124
SWPV1-291	SWPV2-298	CNPV312	CNPV312 conserved hypothetical protein	53.704	98.795	168	166	166
SWPV1-292	SWPV2-299	CNPV313	CNPV313 Ig-like domain protein	69.43	98.165	213	218	218
SWPV1-293	SWPV2-300	CNPV314	CNPV314 ankyrin repeat protein	71.552	99.829	580	629	584
SWPV1-294			CNPV011 ankyrin repeat protein	32		513		586
SWPV1-295	SWPV2-301	CNPV315	CNPV315 G protein-coupled receptor-like protein	59.17	99.365	315	315	315
SWPV1-296			CNPV014 Ig-like domain protein	59.624		230		490
SWPV1-297			CNPV014 Ig-like domain protein	59.641		240		490
SWPV1-298			CNPV015 ankyrin repeat protein	45.455		74		528
SWPV1-299			CNPV150 ankyrin repeat protein	36.364		84		351
SWPV1-300	SWPV2-302	CNPV316	CNPV316 ankyrin repeat protein	35.294	99.632	162	544	544
	SWPV2-303	CNPV317	CNPV317 hypothetical protein		100		55	55
	SWPV2-304	CNPV318	CNPV318 ankyrin repeat protein		98.054		514	514
	SWPV2-305	CNPV319	CNPV319 ankyrin repeat protein		97.638		637	739	SWPV2: C-terminus fragment, not likely translated
SWPV1-301			PIPV253 EFc-like protein	69		124		124
SWPV1-302			CNPV015 ankyrin repeat protein	45.276		520		528
SWPV1-303			CNPV223 ankyrin repeat protein	40		480		847
SWPV1-304	SWPV2-306	CNPV320	CNPV320 Ig-like domain protein	76.858	99.787	468	469	469
	SWPV2-307	CNPV321	CNPV321 EFc-like protein		99.194		124	124
	SWPV2-308	CNPV322	CNPV322 ankyrin repeat protein		98.408		689	690
SWPV1-305			CNPV035 C-type lectin-like protein	35.556		138		134
SWPV1-306			CNPV008 C-type lectin-like protein	50		174		169
SWPV1-307	SWPV2-309	CNPV323	CNPV323 conserved hypothetical protein	75.61	93.651	84	186	182
SWPV1-308	SWPV2-310	CNPV324	CNPV324 conserved hypothetical protein	87.387	99.55	220	222	222
SWPV1-309		CNPV325	CNPV325 ankyrin repeat protein	56.458		468		514
SWPV1-310	SWPV2-311	CNPV326	CNPV326 C-type lectin-like protein	32.044	85.99	181	208	204
	SWPV2-312	CNPV327	CNPV327 hypothetical protein		92.941		171	171
		CNPV328	CNPV328 hypothetical protein					72

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ISSN: 1471-2164

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