Table 1 RPKM and log2 fold change values in retrotransposon sequences
From: sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII
Retro transposon | RPKM sRNA_WT | RPKM mRNA_WT | RPKM mRNA_ZAP1 | Log2 fold change (mRNA) ZAP1xWT |
|---|---|---|---|---|
R265.1 | 2212.17 | 165.12 | 48.09 | −1.78 |
R265.10 | 2728.76 | 182.41 | 318.81 | 0.80 |
R265.11 | 8396.39 | 14638.41 | 15671.02 | 0.10 |
R265.12 | 13322.54 | 133.26 | 16.63 | −3.00 |
R265.13 | 3991.29 | 2050.13 | 677.89 | −1.60 |
R265.14 | 8884.66 | 80.78 | 70.59 | −0.19 |
R265.15 | 1676.88 | 0 | 0 | N/A |
R265.16 | 19299.97 | 6745.21 | 11206.42 | 0.73 |
R265.17 | 808.77 | 0 | 27 | N/A |
R265.18 | 5015.68 | 107.47 | 125.22 | 0.22 |
R265.19 | 48521.82 | 29562.31 | 36487.05 | 0.30 |
R265.2 | 2923.34 | 360.06 | 125.86 | −1.52 |
R265.20 | 2567.82 | 168.44 | 183.99 | 0.13 |
R265.21 | 4481.6 | 23880.77 | 25869.49 | 0.11 |
R265.22 | 45424.93 | 259.33 | 226.62 | −0.19 |
R265.23 | 3496.62 | 28.71 | 25.09 | −0.19 |
R265.24 | 1074.35 | 145.76 | 42.46 | −1.78 |
R265.25 | 18917.41 | 9940.13 | 12131.12 | 0.29 |
R265.26 | 2075.06 | 511.17 | 0 | N/A |
R265.27 | 4526.67 | 103.71 | 30.21 | −1.78 |
R265.28 | 1553.01 | 40.86 | 35.71 | −0.19 |
R265.29 | 5431.2 | 496.81 | 186.06 | −1.42 |
R265.3 | 19795.43 | 7875.53 | 9215.24 | 0.23 |
R265.30 | 9472.7 | 2621.35 | 52.66 | −5.64 |
R265.31 | 5159.63 | 129824.4 | 90122.72 | −0.53 |
R265.34 | 4506.72 | 0 | 0 | N/A |
R265.36 | 103818.7 | 10138.81 | 20509.48 | 1.02 |
R265.37 | 39301.07 | 5627.55 | 22949.74 | 2.03 |
R265.38 | 3792.86 | 0 | 35.2714 | N/A |
R265.4 | 4525.26 | 75.71 | 132.32 | 0.80 |
R265.5 | 24813.18 | 22065.62 | 31063.56 | 0.49 |
R265.6 | 37947.45 | 514.37 | 345.77 | −0.57 |
R265.7 | 22013.22 | 17762.5 | 16862.24 | −0.07 |
R265.8 | 3893.5 | 241.84 | 1704.8 | 2.82 |