Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

Table 1 The whole genome assemblies of isolates of Venturia inaequalis and V. pirina

Species	Venturia inaequalis				Venturia pirina
Isolate (race)	Vi1 (race 1) = ICMP13258 = MNH120	Vi1.10 (race 1,10) = EU-B04^d	Vi1.2.8.9 (race 1,2,8,9) = 1639	ViL = 1389	Vp = ICMP11032
Host range	Malus × domestica	Malus × domestica	Malus × domestica	Eriobotrya japonica	Pyrus communis
Estimated genome coverage	120x	90x	89x	89x	74x
Package used for assembly	Velvet	ALLPATHS -LG	Velvet	ALLPATHS -LG	Velvet
Number of scaffolds	1012	1415	1680	1040	364
Size (Mb)	55	61	40	62	41
N50	233760	136376	48770	213378	332167
N90	16289	23736	11843	37088	81548
Repeats in total genome (%)	4.11%	33.41%	0.74%	35.60%	7.28%
Number of predicted genes^a	13333/12546	12234	12868	12258	11960
Percentage completeness: partial (full)^b	99.60 (99.19)	98.79 (95.16)	98.39 (94.76)	97.58 (94.76)	98.39 (95.16)
Percentage completeness: partial (full)^c	99.51 (96.45)	99.37 (97.01)	99.37 (96.94)	99.51 (97.22)	99.65 (97.01)

^aHybrid with hints/ab initio gene predictions for Vi1
^bCEGMA analysis using both partial and full gene sequences [25]
^cBUSCO analysis using both partial and full gene sequences [26]
^dNote the recent race designation change reported for EU-B04 [187], previously reported as race (1,14) by Bus et al. [14]

ISSN: 1471-2164