Table 1 Rawdata and de novo assemby information for the sexual, apomictic and global libraries
From: A reference floral transcriptome of sexual and apomictic Paspalum notatum
Rawdata | Sexual | Apomictic | Global |
|---|---|---|---|
Total reads | 1.367.227 | 1.378.523 | 2.745.750 |
Total bases | 642.887.313 | 682.198.061 | 1.325.085.374 |
Mean sequence length | 470,21 ± 175,91 | 494,88 ± 164,45 | 482,60 ± 170,70 |
Minimum length | 21 | 24 | 21 |
Maximum length | 1.754 | 1.315 | 1.754 |
Mode length | 563 | 536 | 563 |
Mean GC content | 53,37 ± 9,46 | 52,85 ± 9,13 | 53,11 ± 9,30 |
Minimum GC content | 0 | 0 | 0 |
Maximum GC content | 96 | 93 | 96 |
Mode GC content | 50 | 51 | 51 |
Total contigs | 50.503 | 56.163 | 79.335 |
Total bases in contigs | 40.566.966 | 43.448.946 | 57.550.073 |
Total isotigs | 43.888 | 47.569 | 67.617 |
Total bases in isotigs | 51.472.249 | 56.806.751 | 86.162.368 |
Total isogroups | 35.430 | 37.124 | 48.842 |
Total isogroups w/ one isotig | 30.542 | 31.137 | 40.274 |
Total isotigs w/ one contig | 30.455 | 31.039 | 40.139 |