Selective sweep with significant positive selection serves as the driving force for the differentiation of japonica and indica rice cultivars

Yuan, Yang; Zhang, Qijun; Zeng, Shuiyun; Gu, Longjiang; Si, Weina; Zhang, Xiaohui; Tian, Dacheng; Yang, Sihai; Wang, Long

doi:10.1186/s12864-017-3702-x

Table 4 Results of the analysis by Tajima’s D and F_st statistics between the japonica and indica populations in the DR-I region

From: Selective sweep with significant positive selection serves as the driving force for the differentiation of japonica and indica rice cultivars

	Chr	Range of the blocks	Tajima’s D			F_st (Jap vs Ind)
	Chr	Range of the blocks	Jap.	Ind.	Cultivar	F_st (Jap vs Ind)
1	chr01	35499730–35510003	−2.344**	−2.319**	2.564**	0.93668**
2	chr01	35839043–35890683	−2.284**	−2.388**	1.470	0.88126**
3	chr02	13139975–13160003	−1.971**	−1.896	1.050	0.93705**
4	chr02	13349983–13360044	−1.940**	−2.265**	0.953	0.93638**
5	chr02	14944936–14962544	−1.871**	−1.518	1.551	0.8978**
6	chr02	27708263–27721727	−1.921**	−1.917**	2.404**	0.94298**
7	chr03	1579192–1602557	−1.794	−2.420**	1.862*	0.90987**
8	chr03	2483329–2542460	−2.171**	−1.616	1.587*	0.93704**
9	chr03	2706518–2724355	−2.379**	−2.458**	1.533*	0.84626**
10	chr03	2832279–2854311	−2.412**	−2.235*	1.182	0.58542
11	chr03	2896026–2923841	−2.343**	−2.108**	1.708*	0.90956**
12	chr03	2997394–3195565	−2.220**	−1.027	2.526**	0.94684**
13	chr03	3479756–3498823	−2.313**	−0.066	2.738**	0.9228**
14	chr03	24189350–24230136	−2.058**	−2.162**	1.219	0.92474**
15	chr03	28469725–28489493	−2.303**	−1.961**	1.236	0.8877**
16	chr04	34409908–34420007	−2.097**	−1.729	2.262*	0.91761**
17	chr04	34469603–34500654	−1.915**	−2.145**	1.701*	0.93408**
18	chr05	21659599–21670204	−1.757	−2.137**	0.900	0.89436**
19	chr05	22789981–22800012	−1.857	−2.009**	2.331**	0.91203**
20	chr05	22869880–22880236	−1.993**	−2.020**	2.582**	0.85427**
21	chr05	24026607–24070766	−2.116**	−1.458	2.510**	0.74986**
22	chr05	24300403–24330214	−2.017**	−2.275**	2.936**	0.94534**
23	chr05	26824033–26840483	−1.731	−1.795	2.738**	0.93111**
24	chr07	4149981–4163826	−1.766	−1.686	2.518**	0.92099**
25	chr07	25598750–25620217	−2.310**	−2.049**	2.955**	0.89888**
26	chr09	22759164–22771433	−2.131**	−2.444**	0.349	0.93668**
27	chr09	22910542–22930021	−1.892	−2.106**	2.634**	0.88126**
28	chr10	21289972–21400480	−2.120**	−1.634	2.594**	0.93705**

*and **indicate P-value < 0.05 and 0.01, respectively

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