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Table 5 Translational optimal codons of T. multiceps

From: Analysis of transcriptome data reveals multifactor constraint on codon usage in Taenia multiceps

AA Codon High
RSCU(N)
Low
RSCU(N)
AA Codon High
RSCU(N)
Low
RSCU(N)
Phe UUU 0.78(2687) 1.13(1612) Ser UCU 1.01(1455) 1.14(1901)
  UUC* 1.22(4172) 0.87(1229)   UCC* 1.54(2224) 1.01(1678)
Leu UUA 0.25 (555) 0.63(1404)   UCA 0.75(1079) 1.16(1937)
  UUG 0.79(1723) 1.41(3125)   UCG 0.90(1294) 0.83(1389)
  CUU 1.10(2413) 1.32(2910)   AGU 0.85(1231) 1.07(1785)
  CUC* 2.03(4437) 0.84(1864)   AGC 0.95(1372) 0.78(1295)
  CUA 0.50(1096) 0.62(1375) Pro CCU 1.05(1557) 1.15 (985)
  CUG* 1.33(2917) 1.17(2592)   CCC* 1.37(2037) 0.82 (703)
Ile AUU 1.06(2541) 1.42(2609)   CCA 0.90(1336) 1.36(1163)
  AUC* 1.52(3644) 0.87(1605)   CCG 0.69(1026) 0.67 (575)
  AUA 0.42(1019) 0.70(1292) Thr ACU 1.02(1663) 1.16(1879)
Met AUG 1.00(2622) 1.00(2746)   ACC* 1.50(2449) 0.92(1492)
Val GUU 0.90(2027) 1.37(2157)   ACA 0.77(1262) 1.08(1756)
  GUC* 1.26(2837) 0.79(1249)   ACG 0.71(1153) 0.85(1380)
  GUA 0.42 (948) 0.63 (989) Ala GCU 1.09(2436) 1.27(3404)
  GUG* 1.42(3213) 1.20(1890)   GCC* 1.40(3133) 0.96(2575)
Tyr UAU 0.59(1234) 1.05(1239)   GCA 0.75(1686) 1.04(2780)
  UAC* 1.41(2920) 0.95(1124)   GCG 0.76(1691) 0.73(1955)
His CAU 0.80(1079) 1.10(1275) Cys UGU 0.87(1565) 1.11 (806)
  CAC* 1.20(1630) 0.90(1052)   UGC* 1.13(2036) 0.89 (649)
Gln CAA 0.86(1319) 1.01(3748) Trp UGG 1.00(1904) 1.00 (714)
  CAG* 1.14(1755) 0.99(3698) Arg CGU* 1.52(1377) 1.28(2285)
Asn AAU 0.87(1721) 1.21(3282)   CGC* 1.61(1460) 1.03(1841)
  AAC* 1.13(2251) 0.79(2132)   CGA 1.15(1040) 1.10(1972)
Lys AAA 0.79(1230) 0.95(5661)   CGG 0.78 (707) 0.72(1286)
  AAG* 1.21(1865) 1.05(6277)   AGA 0.46 (421) 1.01(1808)
Asp GAU 0.91(1832) 1.20(4650)   AGG 0.47 (429) 0.85(1523)
  GAC* 1.09(2215) 0.80(3082) Gly GGU 1.34(2761) 1.37(1483)
Glu GAA 0.70(1403) 1.01(8782)   GGC* 1.41(2917) 0.92 (997)
  GAG* 1.30(2606) 0.99(8660)   GGA 0.81(1665) 1.03(1110)
      GGG 0.44 (919) 0.68 (739)
  1. Note: AA: amino acid; N: number of codons; RSCU: Relative synonymous codon usage. The codon usage of 431 genes (5% of the total number of genes) from the extremes of the principal were pooled. The codon usage of both pools was compared using Chi squared test, to identify optimal codons. Asterisks denote codons that occurred significantly more often (P < 0.01)