From: Analysis of transcriptome data reveals multifactor constraint on codon usage in Taenia multiceps
AA | Codon | High RSCU(N) | Low RSCU(N) | AA | Codon | High RSCU(N) | Low RSCU(N) |
---|---|---|---|---|---|---|---|
Phe | UUU | 0.78(2687) | 1.13(1612) | Ser | UCU | 1.01(1455) | 1.14(1901) |
UUC* | 1.22(4172) | 0.87(1229) | UCC* | 1.54(2224) | 1.01(1678) | ||
Leu | UUA | 0.25 (555) | 0.63(1404) | UCA | 0.75(1079) | 1.16(1937) | |
UUG | 0.79(1723) | 1.41(3125) | UCG | 0.90(1294) | 0.83(1389) | ||
CUU | 1.10(2413) | 1.32(2910) | AGU | 0.85(1231) | 1.07(1785) | ||
CUC* | 2.03(4437) | 0.84(1864) | AGC | 0.95(1372) | 0.78(1295) | ||
CUA | 0.50(1096) | 0.62(1375) | Pro | CCU | 1.05(1557) | 1.15 (985) | |
CUG* | 1.33(2917) | 1.17(2592) | CCC* | 1.37(2037) | 0.82 (703) | ||
Ile | AUU | 1.06(2541) | 1.42(2609) | CCA | 0.90(1336) | 1.36(1163) | |
AUC* | 1.52(3644) | 0.87(1605) | CCG | 0.69(1026) | 0.67 (575) | ||
AUA | 0.42(1019) | 0.70(1292) | Thr | ACU | 1.02(1663) | 1.16(1879) | |
Met | AUG | 1.00(2622) | 1.00(2746) | ACC* | 1.50(2449) | 0.92(1492) | |
Val | GUU | 0.90(2027) | 1.37(2157) | ACA | 0.77(1262) | 1.08(1756) | |
GUC* | 1.26(2837) | 0.79(1249) | ACG | 0.71(1153) | 0.85(1380) | ||
GUA | 0.42 (948) | 0.63 (989) | Ala | GCU | 1.09(2436) | 1.27(3404) | |
GUG* | 1.42(3213) | 1.20(1890) | GCC* | 1.40(3133) | 0.96(2575) | ||
Tyr | UAU | 0.59(1234) | 1.05(1239) | GCA | 0.75(1686) | 1.04(2780) | |
UAC* | 1.41(2920) | 0.95(1124) | GCG | 0.76(1691) | 0.73(1955) | ||
His | CAU | 0.80(1079) | 1.10(1275) | Cys | UGU | 0.87(1565) | 1.11 (806) |
CAC* | 1.20(1630) | 0.90(1052) | UGC* | 1.13(2036) | 0.89 (649) | ||
Gln | CAA | 0.86(1319) | 1.01(3748) | Trp | UGG | 1.00(1904) | 1.00 (714) |
CAG* | 1.14(1755) | 0.99(3698) | Arg | CGU* | 1.52(1377) | 1.28(2285) | |
Asn | AAU | 0.87(1721) | 1.21(3282) | CGC* | 1.61(1460) | 1.03(1841) | |
AAC* | 1.13(2251) | 0.79(2132) | CGA | 1.15(1040) | 1.10(1972) | ||
Lys | AAA | 0.79(1230) | 0.95(5661) | CGG | 0.78 (707) | 0.72(1286) | |
AAG* | 1.21(1865) | 1.05(6277) | AGA | 0.46 (421) | 1.01(1808) | ||
Asp | GAU | 0.91(1832) | 1.20(4650) | AGG | 0.47 (429) | 0.85(1523) | |
GAC* | 1.09(2215) | 0.80(3082) | Gly | GGU | 1.34(2761) | 1.37(1483) | |
Glu | GAA | 0.70(1403) | 1.01(8782) | GGC* | 1.41(2917) | 0.92 (997) | |
GAG* | 1.30(2606) | 0.99(8660) | GGA | 0.81(1665) | 1.03(1110) | ||
GGG | 0.44 (919) | 0.68 (739) |