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Table 1 Summary of read numbers based on the RNA-Seq data obtained from each sample

From: Transcriptome profiling of litchi leaves in response to low temperature reveals candidate regulatory genes and key metabolic events during floral induction

Map to gene

Reads number

0W

2W + V

2W-V

3W + V

3W-V

Total reads

19,519,570

21,999,628

19,615,348

18,455,548

26,001,726

Total base pairs

1,951,957,000

2,199,962,800

1,961,534,800

1,845,554,800

2,600,172,600

Total mapped reads

15,403,899

17,602,328

15,895,801

14,880,551

20,840,238

Perfect match

10,902,682

12,365,769

11,117,796

10,316,215

14,311,296

≤2 bp mismatch

4,501,217

5,236,559

4,778,005

4,564,336

6,528,942

Unique match

11,774,798

13,386,594

12,147,205

11,350,543

16,042,994

Multi-position match

3,629,101

4,215,734

3,748,596

3,530,008

4,797,244

Total unmapped reads

4,115,671

4,397,300

3,719,547

3,574,997

5,161,488

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BMC Genomics

ISSN: 1471-2164

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