Table 1 Twenty-one common orphan genes significantly down-regulated in ToCV whiteflies following 24 and 72Â h AAPs compared to virus-free whiteflies
Gene | Strand | Intron | Gene length | CDS | Amino acid length | Location |
|---|---|---|---|---|---|---|
Bta00776 | Positive | No | 762 | 762 | 253 | Scaffold1103:822356..823117 |
Bta00778 | Positive | No | 1917 | 1917 | 638 | Scaffold1103:853502..855418 |
Bta00782 | Positive | No | 762 | 762 | 253 | Scaffold1103:863325..864086 |
Bta00786 | Positive | No | 666 | 666 | 221 | Scaffold1103:883608..884273 |
Bta00791 | Positive | Yes | 8199 | 1026 | 341 | Scaffold1103:927622..935820 |
Bta00821 | Positive | Yes | 29715 | 333 | 110 | Scaffold111:484171..513885 |
Bta04889 | Negative | No | 399 | 399 | 132 | Scaffold17:2533547..2533945 |
Bta04890 | Positive | No | 501 | 501 | 166 | Scaffold17:2535826..2536326 |
Bta04891 | Positive | No | 399 | 399 | 132 | Scaffold17:2541649..2542047 |
Bta04892 | Positive | No | 405 | 405 | 134 | Scaffold17:2547180..2547584 |
Bta04893 | Positive | No | 405 | 405 | 134 | Scaffold17:2550437..2550841 |
Bta04904 | Positive | No | 267 | 267 | 88 | Scaffold17:2821313..2821579 |
Bta04923 | Positive | No | 405 | 405 | 134 | Scaffold17:3256245..3256649 |
Bta04929 | Positive | No | 405 | 405 | 134 | Scaffold17:3520541..3520945 |
Bta08354 | Positive | Yes | 11999 | 2481 | 826 | Scaffold320:2336876..2348874 |
Bta09022 | Positive | Yes | 10221 | 4524 | 1507 | Scaffold338:275546..285766 |
Bta09026 | Positive | Yes | 9788 | 4338 | 1445 | Scaffold338:319459..329246 |
Bta09957 | Positive | No | 768 | 768 | 255 | Scaffold382:555931..556698 |
Bta14115 | Negative | No | 522 | 522 | 173 | Scaffold73:1576252..1576773 |
Bta14126 | Positive | No | 570 | 570 | 189 | Scaffold73:1855693..1856262 |
Bta15275 | Negative | No | 927 | 927 | 308 | Scaffold942:232434..233360 |