Table 7 C. goeringii novel miRNAs and their precursors identified in this study
miRNA | Sequence | Read number | Chr-location | Length (nt) | Potential_energy (kcal/mol) |
|---|---|---|---|---|---|
Cgo-m0001-3p | AGGCGGCGCGUGCGGGUUGG | 11 | CL4439Contig1:400:473:+ | 74 | −30.60 |
Cgo-m0001-5p | GAGCUUGUGUGGCACAAAAG | 32 | CL4073Contig1:867:932:+ | 66 | −21.40 |
Cgo-m0002-5p | CGUGAGCCAGGGCAUCAAGCA | 10 | ep123.comp16229_c0_seq1:56:148:- | 93 | −24.70 |
Cgo-m0003-5p | CAUGCUGGUUCAGCGGCGUCG | 76 | ep456.comp50928_c0_seq1:277:367:+ | 91 | −30.00 |
Cgo-m0004-3p | AUCGAAUGUGUAGGAUAGGUGGG | 10 | ep123.comp41527_c0_seq11:1016:1092:- | 77 | −24.20 |
Cgo-m0004-5p | CUUUGGGCCUUUCCUGCGCAGC | 50 | ep123.comp41527_c0_seq13:1138:1220:- | 83 | −42.00 |
Cgo-m0005-5p | CCGGAAGGUCAAGGAAGUUGG | 57 | ep123.comp41527_c0_seq13:1397:1476:- | 80 | −37.30 |
Cgo-m0006-3p | CACCUUGACUAUAGCUUCGC | 13 | ep123.comp41527_c0_seq8:1017:1091:- | 75 | −24.20 |
Cgo-m0006-5p | UUCUGGCGAAGGCUCUUCAGU | 18 | ep123.comp41527_c0_seq1:1797:1877:- | 81 | −26.70 |
Cgo-m0007-3p | AUCGAAUGUGUAGGAUAGGUGG | 53 | ep123.comp41527_c0_seq4:1017:1091:- | 75 | −24.20 |
Cgo-m0008-3p | CUUCUUUUAACUCUACUGAUG | 12 | ep123.comp45914_c0_seq1:1353:1426:+ | 74 | −21.40 |
Cgo-m0010-3p | CAGUUGGAGAGUUUGGCUGU | 12 | ep456.comp295757_c0_seq1:267:343:- | 77 | −23.60 |
Cgo-m0010-5p | UAUCGCGUAUUUCAGACUGUG | 20 | ep123.comp48991_c0_seq1:1338:1424:+ | 87 | −21.80 |
Cgo-m0011-3p | GGAGAAGGAAGGUGGUCAUGGU | 15 | ep456.comp48451_c0_seq2:257:343:- | 87 | −30.80 |
Cgo-m0012-5p | AUUUUUAGCGCGGAUUCUGACU | 10 | ep456.comp48041_c0_seq1:1552:1628:+ | 77 | −20.60 |
Cgo-m0013-3p | GGAGAAGGAAGGUGGUCAUGG | 30 | ep456.comp48451_c0_seq2:258:342:- | 85 | −30.80 |
Cgo-m0013-5p | GAAUUGGUCGACUCAUCAGG | 10 | ep456.comp53024_c0_seq1:6547:6616:+ | 70 | −24.60 |
Cgo-m0014-5p | GCGCGCAGUGAACUGGUUUUCUG | 26 | ep456.comp53024_c0_seq5:3619:3713:+ | 95 | −29.80 |
Cgo-m0015-5p | GCCGGAAGGUCAAGGAAGUUGGUG | 80 | ep456.comp53024_c0_seq5:5411:5491:+ | 81 | −37.60 |
Cgo-m0016-5p | UUUGCAGGAGUUAUGUAUCGG | 21 | ep456.comp52937_c0_seq1:286:375:+ | 90 | −25.30 |
Cgo-m0017-3p | CGGAUUUAUGCCGGACGCAGCU | 27 | ep456.comp53646_c0_seq2:117:189:- | 73 | −27.10 |
Cgo-m0017-5p | AUGCUUCAUCAUCUGGUCGUUGA | 12 | ep456.comp55956_c0_seq1:1633:1732:- | 100 | −20.80 |
Cgo-m0018-5p | AUGGCCUGAUAUUGCAAUUG | 30 | ep456.comp57349_c0_seq1:186:273:+ | 88 | −29.30 |
Cgo-m0019-5p | AUGGCCUGAUAUUGCAAUUGCGUG | 40 | ep456.comp57349_c0_seq3:186:273:+ | 88 | −29.30 |
Cgo-m0020-3p | UGGGAACCUGAAAGGUGGUGG | 10 | ep456.comp58210_c0_seq1:4180:4271:- | 92 | −26.40 |