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Table 4 Alignment and full-length assessment of a selected gene set

From: A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing

Gene alignment covered (%)

Transcripts counts

PacBio transcript isoforms

De novo transcript contigs

Unigenes

SoGI

>90

103

87

48

22

>80

133

118

63

37

>70

144

130

89

55

>60

151

137

111

73

>50

158

147

122

100

>40

162

150

137

123

>30

163

153

144

142

>20

163

161

150

156

>10

164

162

155

164