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Table 6 Annotation of sugarcane transcriptome

From: A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing

Assembly

Database

Viridiplantae proteinsa

Sorghum proteinsa

Sugarcane EST (SUCEST)a

PacBio transcript isoforms

Transcript isoforms matched

99,313

97,997

96,523

% transcript isoforms

92.30

91.08

89.71

Number of proteins matched

30,001

19,057

22,231

% proteins in database

 

40.37

47.61

De novo transcript contigs

Transcript contigs matched

314,814

276,423

546,177

% transcript contigs

34.73

30.49

60.25

Number of proteins matched

67,162

28,901

36,501

% proteins in database

 

61.22

84.59

  1. aat an e-value ≤1e-5