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Table 6 Annotation of sugarcane transcriptome

From: A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing

Assembly Database
Viridiplantae proteinsa Sorghum proteinsa Sugarcane EST (SUCEST)a
PacBio transcript isoforms Transcript isoforms matched 99,313 97,997 96,523
% transcript isoforms 92.30 91.08 89.71
Number of proteins matched 30,001 19,057 22,231
% proteins in database   40.37 47.61
De novo transcript contigs Transcript contigs matched 314,814 276,423 546,177
% transcript contigs 34.73 30.49 60.25
Number of proteins matched 67,162 28,901 36,501
% proteins in database   61.22 84.59
  1. aat an e-value ≤1e-5