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Table 8 Sugarcane varieties used for RNA extraction

From: A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing

Sample type

Varieties

Tissue description

Leaf tissue samples

KQ228, Q208

The first, third and fifth visible dewlap leaf of mature plants

Stalk tissue samplesa

QC02-402, QA02-1009, QN05-1460, QN05-1743, QN05-1509, QS99-2014, QA96-1749, Q241, Q200, QN05-803, KQB07-23863, KQB08-32953, KQB07-23990, KQ08-2850, KQB07-24619, KQB07-24739, QBYN04-26041, KQB09-23137, KQB09-20620, KQB09-20432

Internode 3 from the top and internode 2 from the bottom of high, medium and low fiber content sugarcane varieties from mature plants

Root tissue samples

KQ228, Q208

Mature roots and root apex from immature plants

  1. aSamples were used for RNA-Seq, while all was used for PacBio Iso-Seq