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Table 1 List of annotated genes in Bat MHC-II region

From: Insights into the ancestral organisation of the mammalian MHC class II region from the genome of the pteropid bat, Pteropus alecto

Description Gene Start End Strand Accession Locus Taga
NA - 54622 54407 - ELK16616 PAL_GLEAN10007084
ψ MHC Class II DR β chain 2 DRB2 124020 127163 + ELK16617 PAL_GLEAN10007085
Promotilin MLN 171900 176944 + ELK16618 PAL_GLEAN10007086
LEM domain-containing protein 2 LEMD2 184083 200005 + ELK16619 PAL_GLEAN10007087
Inositol hexakisphosphate kinase 3 IP6K3 233132 244985 + ELK16620 PAL_GLEAN10007088
Uncharacterised protein C6orf125 homolog - 251970 264591 + ELK16621 PAL_GLEAN10007089
Inositol 1,4,5-trisphosphate receptor type 3 ITPR3 330989 267163 - ELK16622 PAL_GLEAN10007090
Putative Bcl-2 homologous antagonist/killer 2 BCL2L7P1 358514 361666 + ELK16623 PAL_GLEAN10007091
Zinc finger and BTB domain-containing protein 9 ZBTB9 435884 437284 - ELK16624 PAL_GLEAN10007093
Ras GTPase-activating protein SynGAP SYNGAP1 444762 473798 - ELK16625 PAL_GLEAN10007094
Protein CutA CUTA 475923 477426 + ELK16626 PAL_GLEAN10007095
PHD finger protein 1 PHF1 483072 477988 - ELK16627 PAL_GLEAN10007096
Kinesin-like protein KIFC1 KIFC1 493984 483931 - ELK16628 PAL_GLEAN10007097
Death domain-associated protein 6 DAXX 547565 550867 + ELK16629 PAL_GLEAN10007098
Zinc finger and BTB domain-containing protein 22 ZBTB22 552438 554336 + ELK16630 PAL_GLEAN10007099
Tapasin TAPBP 555260 564216 + ELK16631 PAL_GLEAN10007100
Ral guanine nucleotide dissociation stimulator-like 2 RGL2 566433 572764 + ELK16632 PAL_GLEAN10007101
Prefoldin subunit 6 PFDN6 575085 574122 - ELK16633 PAL_GLEAN10007102
WD repeat-containing protein 46 WDR46 575753 582904 + ELK16634 PAL_GLEAN10007103
Beta-1,3-galactosyltransferase 4 B3GALT4 585083 583725 - ELK16635 PAL_GLEAN10007104
40S ribosomal protein S18 RPS18 590495 585718 - ELK16636 PAL_GLEAN10007105
Vacuolar protein sorting-associated protein 52 homolog VPS52 590542 608895 + ELK16637 PAL_GLEAN10007106
E3 ubiquitin-protein ligase RING1 RING1 632961 629730 - ELK16638 PAL_GLEAN10007107
Estradiol 17-beta-dehydrogenase 8 HSD17B8 636805 635286 - ELK16639 PAL_GLEAN10007108
Zinc transporter SLC39A7 SLC39A7 640599 638121 - ELK16640 PAL_GLEAN10007109
Retinoic acid receptor RXR-beta RXRB 641371 646657 + ELK16641 PAL_GLEAN10007110
Collagen alpha-2(XI) chain COL11A2 674830 675093 + ELK16642 PAL_GLEAN10007112
ψMHC Class II DP β chain 1 (Fragment) DPB1 703197 701801 - ELK16643 PAL_GLEAN10007114
RNA-binding protein Raly RALY 730049 730573 + ELK16644 PAL_GLEAN10007116
MHC Class II DO α chain DOA 734481 736943 + ELK16645 PAL_GLEAN10007117
Bromodomain-containing protein 2 BRD2 762249 755609 - ELK16646 PAL_GLEAN10007118
MHC Class II DM α chain DMA 779647 782542 + ELK16647 PAL_GLEAN10007119
MHC Class II DM β chain DMB 788588 791667 + - -
Proteasome subunit beta type-9 PSMB9 868896 864164 - ELK16648 PAL_GLEAN10007120
Antigen peptide transporter 1 TAP1 869430 876791 + ELK16649 PAL_GLEAN10007121
Proteasome subunit beta type-8 PSMB8 878304 881075 + ELK16650 PAL_GLEAN10007122
Antigen peptide transporter 2 TAP2 883417 891866 + ELK16651 PAL_GLEAN10007123
MHC Class II DO β chain DOB 904258 907879 + ELK16652 PAL_GLEAN10007124
MHC Class II DQ β chain 1 DQB1 924949 931213 + ELK16653 PAL_GLEAN10007125
MHC Class II DQ α chain 1 DQA1 948995 947759 - - PAL_GLEAN10007126
MHC Class II DQ β chain 2 DQB2 1039500 1044135 + - -
MHC Class II DQ α chain 2 DQA2 1064301 1059023 - ELK16654 PAL_GLEAN10007127
MHC Class II DR β chain 1 DRB1 1184173 1187159 + - PAL_GLEAN10007128
MHC Class II DR α chain DRA 1213079 1209726 - ELK16655 PAL_GLEAN10007129
Butyrophilin-like protein 2 BTNL2 1230144 1232101 + ELK16656 PAL_GLEAN10007130
Butyrophilin-like protein 2 BTNL2 1239555 1241047 + ELK16657 PAL_GLEAN10007131
Butyrophilin subfamily 2 member A3 BTN1A1 1260527 1250684 - ELK16658 PAL_GLEAN10007132
  1. aLocus tags refer to annotations in the P. alecto whole genome
  2. ψ represents putative pseudogenes