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Table 2 Fraction of WGA-enriched and non-enriched indels in three indel categories

From: Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls

 

% Other Indels

% Homopolymer Indels

% Large Indels

WGA-enriched

47.78

27.13

25.07

Non-enriched

83.52

9.63

6.83

  1. Homopolymer indels: indels with a 4 or more single base repeat directly proximal to the indel; Large indels: indels with 15 or more inserted or deleted bases. Other indels: all indels that don’t fit one of the previous criteria
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BMC Genomics

ISSN: 1471-2164

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