Sample name | Abbrev. | Lane | Total number of reads | Accepted | Proportions | Number of reads longer than 16 nt, for which the 3’ adapter was trimmed | |||
---|---|---|---|---|---|---|---|---|---|
Accepted | R | %R | NR | C | |||||
AfuCV-free replicate-1 | CV_fr_r1 | 1 | 13,348,762 | 13,324,297 | 0.998 | 11,742,638 | 0.881 | 1,378,253 | 0.117 |
AfuCV-free replicate-2 | CV_fr_r2 | 2 | 12,660,320 | 12,649,615 | 0.999 | 10,174,786 | 0.804 | 1,162,519 | 0.114 |
AfuCV-infected replicate-1 | CV_inf_r1 | 1 | 18,854,816 | 18,820,738 | 0.998 | 16,692,438 | 0.886 | 1,542,300 | 0.092 |
AfuCV-infected replicate-2 | CV_inf_r2 | 2 | 29,833,968 | 29,808,782 | 0.999 | 16,527,962 | 0.554 | 2,056,245 | 0.124 |
AfuTmV-1-free replicate-1 | NK_fr_r1 | 1 | 23,496,360 | 23,451,950 | 0.998 | 18,143,950 | 0.773 | 1,934,229 | 0.106 |
AfuTmV-1-free replicate-2 | NK_fr_r2 | 2 | 15,108,040 | 15,094,812 | 0.999 | 13,111,549 | 0.868 | 1,458,994 | 0.111 |
AfuTmV-1-infected replicate-1 | NK_inf_r1 | 1 | 19,462,083 | 19,426,804 | 0.998 | 18,256,598 | 0.939 | 1,277,070 | 0.069 |
AfuTmV-1-infected replicate-2 | NK_inf_r2 | 2 | 16,321,084 | 16,307,025 | 0.999 | 14,786,845 | 0.906 | 1,080,077 | 0.073 |
AfuPV-free replicate-1 | PV_fr_r1 | 1 | 25,140,571 | 25,093,215 | 0.998 | 18,306,280 | 0.729 | 1,804,541 | 0.098 |
AfuPV-free replicate-2 | PV_fr_r2 | 2 | 17,933,898 | 17,917,874 | 0.999 | 15,624,975 | 0.872 | 1,144,861 | 0.073 |
AfuPV-infected replicate-1 | PV_inf_r1 | 1 | 43,825,751 | 43,744,985 | 0.998 | 41,804,128 | 0.955 | 1,748,249 | 0.041 |
AfuPV-infected replicate-2 | PV_inf_r2 | 2 | 20,461,547 | 20,444,254 | 0.999 | 18,586,370 | 0.909 | 1,233,590 | 0.066 |